Search of human proteins with 155030220

Search of human proteins with 155030220

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|155030220 PDS5, regulator of cohesion maintenance, homolog A
isoform 3 [Homo sapiens]
         (600 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|155030220 PDS5, regulator of cohesion maintenance, homolog A ...  1201   0.0  
gi|155030216 PDS5, regulator of cohesion maintenance, homolog A ...  1182   0.0  
gi|155030218 PDS5, regulator of cohesion maintenance, homolog A ...  1102   0.0  
gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [H...   960   0.0  
gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens]          32   1.3  
gi|40018614 DRE1 protein [Homo sapiens]                                32   2.2  
gi|157779137 dymeclin [Homo sapiens]                                   31   2.8  
gi|240255505 potassium channel, subfamily T, member 1 [Homo sapi...    31   3.7  
gi|93102424 hypothetical protein LOC23116 [Homo sapiens]               31   3.7  
gi|164607167 ubiquitin specific peptidase 30 [Homo sapiens]            30   6.3  
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]             30   6.3  

>gi|155030220 PDS5, regulator of cohesion maintenance, homolog A
           isoform 3 [Homo sapiens]
          Length = 600

 Score = 1201 bits (3107), Expect = 0.0
 Identities = 600/600 (100%), Positives = 600/600 (100%)

Query: 1   MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSE 60
           MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSE
Sbjct: 1   MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSE 60

Query: 61  DEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFI 120
           DEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFI
Sbjct: 61  DEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFI 120

Query: 121 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHN 180
           TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHN
Sbjct: 121 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHN 180

Query: 181 KKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIE 240
           KKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIE
Sbjct: 181 KKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIE 240

Query: 241 ACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERL 300
           ACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERL
Sbjct: 241 ACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERL 300

Query: 301 AVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKD 360
           AVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKD
Sbjct: 301 AVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKD 360

Query: 361 LTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM 420
           LTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM
Sbjct: 361 LTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM 420

Query: 421 GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET 480
           GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET
Sbjct: 421 GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET 480

Query: 481 EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLM 540
           EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLM
Sbjct: 481 EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLM 540

Query: 541 TIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICVVSKSYFTLFL 600
           TIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICVVSKSYFTLFL
Sbjct: 541 TIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICVVSKSYFTLFL 600


>gi|155030216 PDS5, regulator of cohesion maintenance, homolog A
           isoform 1 [Homo sapiens]
          Length = 1337

 Score = 1182 bits (3058), Expect = 0.0
 Identities = 590/590 (100%), Positives = 590/590 (100%)

Query: 1   MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSE 60
           MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSE
Sbjct: 1   MDFTAQPKPATALCGVVSADGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSE 60

Query: 61  DEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFI 120
           DEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFI
Sbjct: 61  DEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFI 120

Query: 121 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHN 180
           TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHN
Sbjct: 121 TRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHN 180

Query: 181 KKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIE 240
           KKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIE
Sbjct: 181 KKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIE 240

Query: 241 ACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERL 300
           ACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERL
Sbjct: 241 ACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERL 300

Query: 301 AVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKD 360
           AVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKD
Sbjct: 301 AVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKD 360

Query: 361 LTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM 420
           LTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM
Sbjct: 361 LTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMM 420

Query: 421 GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET 480
           GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET
Sbjct: 421 GLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLET 480

Query: 481 EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLM 540
           EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLM
Sbjct: 481 EERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLM 540

Query: 541 TIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICV 590
           TIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICV
Sbjct: 541 TIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPTCSCKQADICV 590


>gi|155030218 PDS5, regulator of cohesion maintenance, homolog A
           isoform 2 [Homo sapiens]
          Length = 1297

 Score = 1102 bits (2849), Expect = 0.0
 Identities = 550/550 (100%), Positives = 550/550 (100%)

Query: 41  MIKRLKMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRI 100
           MIKRLKMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRI
Sbjct: 1   MIKRLKMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVACCLADIFRI 60

Query: 101 YAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDC 160
           YAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDC
Sbjct: 61  YAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFELEDC 120

Query: 161 NEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNL 220
           NEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNL
Sbjct: 121 NEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPAHKNL 180

Query: 221 NKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLL 280
           NKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLL
Sbjct: 181 NKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVSDLSEHVFDLIQELFAIDPHLL 240

Query: 281 LSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVR 340
           LSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVR
Sbjct: 241 LSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPLWQCFLGRFNDIHVPVR 300

Query: 341 LESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLL 400
           LESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLL
Sbjct: 301 LESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDVIVTIITAAKRDLALVNDQLL 360

Query: 401 GFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSID 460
           GFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSID
Sbjct: 361 GFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAGKEAAEKVSWIKDKLLHIYYQNSID 420

Query: 461 DKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELL 520
           DKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELL
Sbjct: 421 DKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAVKALNEMWKCQNMLRSHVRELL 480

Query: 521 DLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPT 580
           DLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPT
Sbjct: 481 DLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKFNQVLGDDEKLRSQLELLISPT 540

Query: 581 CSCKQADICV 590
           CSCKQADICV
Sbjct: 541 CSCKQADICV 550


>gi|7657269 PDS5, regulator of cohesion maintenance, homolog B [Homo
           sapiens]
          Length = 1447

 Score =  960 bits (2481), Expect = 0.0
 Identities = 461/571 (80%), Positives = 526/571 (92%)

Query: 20  DGKIAYPPGVKEITDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFL 79
           DGKI YPPGVKEI+DKI+ +EM++RLKMVVKTFMDMDQDSE+EK+ YL LALHLAS+FFL
Sbjct: 10  DGKITYPPGVKEISDKISKEEMVRRLKMVVKTFMDMDQDSEEEKELYLNLALHLASDFFL 69

Query: 80  RNPNKDVRLLVACCLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGLEDTKSPQFNRYF 139
           ++P+KDVRLLVACCLADIFRIYAPEAPYTS DKLKDIF+FITRQLKGLEDTKSPQFNRYF
Sbjct: 70  KHPDKDVRLLVACCLADIFRIYAPEAPYTSPDKLKDIFMFITRQLKGLEDTKSPQFNRYF 129

Query: 140 YLLENLAWVKSYNICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGD 199
           YLLEN+AWVKSYNICFELED NEIF QL+RTLFSVINN HN+KV MHM+DLMSSII EGD
Sbjct: 130 YLLENIAWVKSYNICFELEDSNEIFTQLYRTLFSVINNGHNQKVHMHMVDLMSSIICEGD 189

Query: 200 GVTQELLDSILINLIPAHKNLNKQSFDLAKVLLKRTVQTIEACIANFFNQVLVLGRSSVS 259
            V+QELLD++L+NL+PAHKNLNKQ++DLAK LLKRT Q IE  I NFFNQVL+LG++S+S
Sbjct: 190 TVSQELLDTVLVNLVPAHKNLNKQAYDLAKALLKRTAQAIEPYITNFFNQVLMLGKTSIS 249

Query: 260 DLSEHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLAT 319
           DLSEHVFDLI EL+ ID HLLLSV+PQLEFKLKSND EERL VV+LLAK+FG+KDS+LA+
Sbjct: 250 DLSEHVFDLILELYNIDSHLLLSVLPQLEFKLKSNDNEERLQVVKLLAKMFGAKDSELAS 309

Query: 320 QNRPLWQCFLGRFNDIHVPVRLESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHD 379
           QN+PLWQC+LGRFNDIHVP+RLE VKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHD
Sbjct: 310 QNKPLWQCYLGRFNDIHVPIRLECVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHD 369

Query: 380 VIVTIITAAKRDLALVNDQLLGFVRERTLDKRWRVRKEAMMGLAQLYKKYCLHGEAGKEA 439
           VIV+I+TAAK+D+ LVND LL FVRERTLDKRWRVRKEAMMGLAQ+YKKY L   AGK+A
Sbjct: 370 VIVSIVTAAKKDILLVNDHLLNFVRERTLDKRWRVRKEAMMGLAQIYKKYALQSAAGKDA 429

Query: 440 AEKVSWIKDKLLHIYYQNSIDDKLLVEKIFAQYLVPHNLETEERMKCLYYLYASLDPNAV 499
           A++++WIKDKLLHIYYQNSIDD+LLVE+IFAQY+VPHNLET ERMKCLYYLYA+LD NAV
Sbjct: 430 AKQIAWIKDKLLHIYYQNSIDDRLLVERIFAQYMVPHNLETTERMKCLYYLYATLDLNAV 489

Query: 500 KALNEMWKCQNMLRSHVRELLDLHKQPTSEANCSAMFGKLMTIAKNLPDPGKAQDFVKKF 559
           KALNEMWKCQN+LR  V++LLDL KQP ++A+  A+F K+M I +NLPDPGKAQDF+KKF
Sbjct: 490 KALNEMWKCQNLLRHQVKDLLDLIKQPKTDASVKAIFSKVMVITRNLPDPGKAQDFMKKF 549

Query: 560 NQVLGDDEKLRSQLELLISPTCSCKQADICV 590
            QVL DDEK+R QLE+L+SPTCSCKQA+ CV
Sbjct: 550 TQVLEDDEKIRKQLEVLVSPTCSCKQAEGCV 580


>gi|241982712 TBP-interacting protein isoform 1 [Homo sapiens]
          Length = 1236

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 33/121 (27%), Positives = 54/121 (44%), Gaps = 12/121 (9%)

Query: 265  VFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQNRPL 324
            V + I +L  ++P  LL   P+L  +L +     R  V+  +  L     SD      PL
Sbjct: 956  VAECIGKLVLVNPSFLL---PRLRKQLAAGRPHTRSTVITAVKFLI----SDQPHPIDPL 1008

Query: 325  WQCFLGRF----NDIHVPVRLESVKFASHCLMNHPDLAKDLTEYLKVRSHDPEEAIRHDV 380
             + F+G F     D  + VR  ++ F +  + N P L +DL + +    +  E  IR D+
Sbjct: 1009 LKSFIGEFMESLQDPDLNVRRATLAFFNSAVHNKPSLVRDLLDDILPLLYQ-ETKIRRDL 1067

Query: 381  I 381
            I
Sbjct: 1068 I 1068


>gi|40018614 DRE1 protein [Homo sapiens]
          Length = 600

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 375 AIRHDVIVTIITAAKRDLALVNDQLLGFVRERTLDK-RWRVRKEAMMGLAQLYKKYCLHG 433
           A+R+D++V+      RD+ + N QL  ++R  +L+K RWR +   ++G     K Y + G
Sbjct: 360 ALRNDILVSGGRINSRDVWIYNSQLNIWIRVASLNKGRWRHKMAVLLG-----KVYVVGG 414

Query: 434 EAGKEAAEKV 443
             G+     V
Sbjct: 415 YDGQNRLSSV 424


>gi|157779137 dymeclin [Homo sapiens]
          Length = 669

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 29/186 (15%)

Query: 152 NICFELEDCNEIFIQLFRTLFSVINNSHNKKVQMHMLDLMSS----------------II 195
           N+  +    ++   Q   +LFS+++  HNK ++     L  S                +I
Sbjct: 469 NMSAQFRSLHQYAAQRIISLFSLLSKKHNKVLEQATQSLRGSLSSNDVPLPDYAQDLNVI 528

Query: 196 MEGDGVTQELLDSILINLIPAHKNL------NKQSFDLAKV--LLKRTVQTIEACIANFF 247
            E   +  E+++S L N +  + NL       +  F+  +     +  +Q I+  I+ F 
Sbjct: 529 EEVIRMMLEIINSCLTNSLHHNPNLVYALLYKRDLFEQFRTHPSFQDIMQNIDLVISFFS 588

Query: 248 NQVLVLGRSSVSDLS-EHVFDLIQELFAIDPHLLLSVMPQLEFKLKSNDGEERLAVVRLL 306
           +++L  G    ++LS E V ++I++     P   L   P+L+FK    +  E   +  + 
Sbjct: 589 SRLLQAG----AELSVERVLEIIKQGVVALPKDRLKKFPELKFKYVEEEQPEEFFIPYVW 644

Query: 307 AKLFGS 312
           + ++ S
Sbjct: 645 SLVYNS 650


>gi|240255505 potassium channel, subfamily T, member 1 [Homo sapiens]
          Length = 1235

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 113  LKDIFLFITRQLKGLEDTKSPQFNRYFYLLENLAWVKSYNICFE--LEDCNEIFIQLFRT 170
            +KD  + ITR L GL+ T    +     + E   W+++Y   F+       EI I ++RT
Sbjct: 984  VKDYMITITRLLLGLDTTPGSGYLCAMKITEGDLWIRTYGRLFQKLCSSSAEIPIGIYRT 1043

Query: 171  LFSVINNS--HNKKVQ 184
               V + S  H+ + Q
Sbjct: 1044 ESHVFSTSEPHDLRAQ 1059


>gi|93102424 hypothetical protein LOC23116 [Homo sapiens]
          Length = 1720

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 24/174 (13%)

Query: 165  IQLFRTLFSVINNSHNKKVQMHMLDLMSSIIMEGDGVTQELLDSILINLIPA--HKNLNK 222
            +++F    S +++S N KV +  L+ M  +I     + ++ L  I+  LIPA    NLN 
Sbjct: 1529 VKIFDAFKSRLHDS-NSKVNLVALETMHKMIP----LLRDHLSPIINMLIPAIVDNNLNS 1583

Query: 223  QSFDLAKVLLKRTVQTIEACIAN------FFNQVLVLGRSSVSDLSEHVFDLIQELFAID 276
            ++  +        VQ +   + N      F  +   L   +  D++E + D++ EL+   
Sbjct: 1584 KNPGIYAAATN-VVQALSQHVDNYLLLQPFCTKAQFLNGKAKQDMTEKLADIVTELYQRK 1642

Query: 277  PHL----LLSVMPQL------EFKLKSNDGEERLAVVRLLAKLFGSKDSDLATQ 320
            PH     +L V+  L         L    G  R A  +L   LF     +L  Q
Sbjct: 1643 PHATEQKVLVVLWHLLGNMTNSGSLPGAGGNIRTATAKLSKALFAQMGQNLLNQ 1696


>gi|164607167 ubiquitin specific peptidase 30 [Homo sapiens]
          Length = 517

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 7/88 (7%)

Query: 57  QDSEDEKQ----QYLPLAL-HLASEFFLRNPNKDVRLLVACCLADIFRIYAPEAPYTSHD 111
           Q S D+K+    QYL L L HL      +    D  +L A CL D+ R+Y  +       
Sbjct: 102 QYSRDQKEPPSHQYLSLTLLHLLKALSCQEVTDD-EVLDASCLLDVLRMYRWQISSFEEQ 160

Query: 112 KLKDIFLFITRQLKGLEDTKSPQFNRYF 139
              ++F  IT  L+   D + P+    F
Sbjct: 161 DAHELFHVITSSLEDERD-RQPRVTHLF 187


>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
          Length = 4116

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 28/141 (19%)

Query: 33   TDKITTDEMIKRLKMVVKTFMDMDQDSEDEKQQYLPLALHLASEFFLRNPNKDVRLLVAC 92
            + K+ ++E+ ++ K+   T   +D+     +  Y P+A+H A+ FF              
Sbjct: 3265 SSKVLSEEISEKQKVASMTETQIDET----RMGYKPVAVHSATIFF-------------- 3306

Query: 93   CLADIFRIYAPEAPYTSHDKLKDIFLFITRQLKGL-EDTKSPQFN-RYFYLLENLAWVKS 150
            C++D+  I  P   Y+       +  FI   +  L   TKS + N R  Y++++      
Sbjct: 3307 CISDLANI-EPMYQYS-------LTWFINLYMHSLTHSTKSEELNLRIKYIIDHFTLSIY 3358

Query: 151  YNICFELEDCNEIFIQLFRTL 171
             N+C  L + +++   L  T+
Sbjct: 3359 NNVCRSLFEKDKLLFSLLLTI 3379


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,145,510
Number of Sequences: 37866
Number of extensions: 864001
Number of successful extensions: 2141
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2135
Number of HSP's gapped (non-prelim): 12
length of query: 600
length of database: 18,247,518
effective HSP length: 108
effective length of query: 492
effective length of database: 14,157,990
effective search space: 6965731080
effective search space used: 6965731080
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.