Guide to the Human Genome
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Search of human proteins with 154800418

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154800418 COMM domain containing 5 [Homo sapiens]
         (224 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|124487382 COMM domain containing 5 [Homo sapiens]                  439   e-124
gi|154800418 COMM domain containing 5 [Homo sapiens]                  439   e-124
gi|19923430 COMM domain containing 5 [Homo sapiens]                   439   e-124
gi|169166962 PREDICTED: similar to COMM domain containing 5 [Hom...   378   e-105
gi|169166771 PREDICTED: similar to COMM domain containing 5 [Hom...   378   e-105
gi|169166418 PREDICTED: similar to COMM domain containing 5 [Hom...   378   e-105
gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]         37   0.014
gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]         37   0.014
gi|6912278 COMM domain containing 3 [Homo sapiens]                     37   0.018
gi|45545435 COMM domain containing 2 [Homo sapiens]                    35   0.068
gi|7706663 COMM domain containing 10 [Homo sapiens]                    34   0.089
gi|5729986 processing of precursor 4 [Homo sapiens]                    33   0.20 
gi|41393583 EGF-like-domain, multiple 7 [Homo sapiens]                 31   0.75 
gi|7705889 EGF-like-domain, multiple 7 [Homo sapiens]                  31   0.75 
gi|45333909 COMM domain containing 6 isoform a [Homo sapiens]          28   4.9  
gi|45333906 COMM domain containing 6 isoform b [Homo sapiens]          28   4.9  
gi|118640870 ADP-ribosyltransferase 5 precursor [Homo sapiens]         28   4.9  
gi|30089992 ADP-ribosyltransferase 5 precursor [Homo sapiens]          28   4.9  
gi|8923458 COMM domain containing 8 [Homo sapiens]                     28   4.9  
gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Ho...    28   6.3  

>gi|124487382 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score =  439 bits (1129), Expect = e-124
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
           MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ
Sbjct: 1   MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60

Query: 61  GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
           GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ
Sbjct: 61  GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120

Query: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
           DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL
Sbjct: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180

Query: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
           KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD
Sbjct: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224


>gi|154800418 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score =  439 bits (1129), Expect = e-124
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
           MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ
Sbjct: 1   MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60

Query: 61  GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
           GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ
Sbjct: 61  GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120

Query: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
           DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL
Sbjct: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180

Query: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
           KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD
Sbjct: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224


>gi|19923430 COMM domain containing 5 [Homo sapiens]
          Length = 224

 Score =  439 bits (1129), Expect = e-124
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60
           MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ
Sbjct: 1   MSAVGAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQ 60

Query: 61  GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120
           GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ
Sbjct: 61  GEDCREAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQ 120

Query: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180
           DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL
Sbjct: 121 DLVGDLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQL 180

Query: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
           KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD
Sbjct: 181 KLSDGSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224


>gi|169166962 PREDICTED: similar to COMM domain containing 5 [Homo
           sapiens]
          Length = 273

 Score =  378 bits (970), Expect = e-105
 Identities = 195/220 (88%), Positives = 201/220 (91%)

Query: 5   GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64
           G  +  LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 54  GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113

Query: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124
           REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173

Query: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
           DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233

Query: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
           G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE  LQD
Sbjct: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273


>gi|169166771 PREDICTED: similar to COMM domain containing 5 [Homo
           sapiens]
          Length = 273

 Score =  378 bits (970), Expect = e-105
 Identities = 195/220 (88%), Positives = 201/220 (91%)

Query: 5   GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64
           G  +  LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 54  GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113

Query: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124
           REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173

Query: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
           DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233

Query: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
           G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE  LQD
Sbjct: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273


>gi|169166418 PREDICTED: similar to COMM domain containing 5 [Homo
           sapiens]
          Length = 273

 Score =  378 bits (970), Expect = e-105
 Identities = 195/220 (88%), Positives = 201/220 (91%)

Query: 5   GAATPYLHHPGDSHSGRVSFLGAQLPPEVAAMARLLGDLDRSTFRKLLKFVVSSLQGEDC 64
           G  +  LHHPG SHSGRVSFLGAQLPPEVAAM +LLGDL+RS FRKLLKFVVSSLQGEDC
Sbjct: 54  GGHSSVLHHPGGSHSGRVSFLGAQLPPEVAAMDQLLGDLNRSMFRKLLKFVVSSLQGEDC 113

Query: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVG 124
           REAVQ LGVS NLP+E LGALLAGMHTLLQQAL LPPTSLKP+TFRDQLQELCIPQDLVG
Sbjct: 114 REAVQCLGVSTNLPQEWLGALLAGMHTLLQQALHLPPTSLKPNTFRDQLQELCIPQDLVG 173

Query: 125 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
           DLASVVFGSQRPLLDSVAQQQGAWLPHVADF+W VDV ISTSALAR LQP VLMQLKLSD
Sbjct: 174 DLASVVFGSQRPLLDSVAQQQGAWLPHVADFQWWVDVTISTSALARFLQPRVLMQLKLSD 233

Query: 185 GSAYRFEVPTAKFQELRYSVALVLKEMADLEKRCERRLQD 224
           G AYRFEVP AKFQELRYSVALVLKEMADLEKRCE  LQD
Sbjct: 234 GLAYRFEVPIAKFQELRYSVALVLKEMADLEKRCEGSLQD 273


>gi|156416007 COMM domain containing 9 isoform 2 [Homo sapiens]
          Length = 156

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
           AQ     LP + D  WRVD+  S+ +++R   P+ L+Q+K+ +
Sbjct: 71  AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 113


>gi|156416005 COMM domain containing 9 isoform 1 [Homo sapiens]
          Length = 198

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 15/43 (34%), Positives = 26/43 (60%)

Query: 142 AQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSD 184
           AQ     LP + D  WRVD+  S+ +++R   P+ L+Q+K+ +
Sbjct: 113 AQANQISLPRLVDLDWRVDIKTSSDSISRMAVPTCLLQMKIQE 155


>gi|6912278 COMM domain containing 3 [Homo sapiens]
          Length = 195

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 146 GAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKL--SDGSAYRFEVPTAKFQELRYS 203
           G  LPH+ D  WR++  I T+ L R  +P+ L+ L +  +D  +Y    P   F      
Sbjct: 119 GRSLPHITDVSWRLEYQIKTNQLHRMYRPAYLVTLSVQNTDSPSY----PEISFSCSMEQ 174

Query: 204 VALVLKEMADLEKRCERRLQ 223
           +  ++ ++ D  K  ER  Q
Sbjct: 175 LQDLVGKLKDASKSLERATQ 194


>gi|45545435 COMM domain containing 2 [Homo sapiens]
          Length = 199

 Score = 34.7 bits (78), Expect = 0.068
 Identities = 27/126 (21%), Positives = 63/126 (50%), Gaps = 8/126 (6%)

Query: 67  AVQRLGVSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDL 126
           A ++L VS++  +  +     G+  LL ++ +L  + L    F+D +  L   ++L   L
Sbjct: 47  AARKLNVSSDTVQHGV----EGLTYLLTESSKLMISELD---FQDSVFVLGFSEEL-NKL 98

Query: 127 ASVVFGSQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGS 186
              ++   R  + ++  +    LP   +  WR+DV +++ +L + ++P+V ++L L+   
Sbjct: 99  LLQLYLDNRKEIRTILSELAPSLPSYHNLEWRLDVQLASRSLRQQIKPAVTIKLHLNQNG 158

Query: 187 AYRFEV 192
            +  +V
Sbjct: 159 DHNTKV 164


>gi|7706663 COMM domain containing 10 [Homo sapiens]
          Length = 202

 Score = 34.3 bits (77), Expect = 0.089
 Identities = 32/171 (18%), Positives = 76/171 (44%), Gaps = 8/171 (4%)

Query: 31  PEVAAMARLLGDLDRSTFRKLLKFVVSSL----QGEDCREAVQRLGVSANLPEEQLGALL 86
           P +     L+  +D   F +LL  ++  L    +     E  ++L  + +L ++ L  +L
Sbjct: 13  PSMKKAVSLINAIDTGRFPRLLTRILQKLHLKAESSFSEEEEEKLQAAFSLEKQDLHLVL 72

Query: 87  AGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFGSQRPLLDSVAQQQG 146
             +  +L+QA+     ++KP   + QL+ + + QD      +      +  ++   Q+  
Sbjct: 73  ETISFILEQAVY---HNVKPAALQQQLENIHLRQDKAEAFVNTWSSMGQETVEKFRQRIL 129

Query: 147 AWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAYRFEVPTAKF 197
           A    +    W++++ ++ SA A+   P  ++QL +++  +   E    +F
Sbjct: 130 APCK-LETVGWQLNLQMAHSAQAKLKSPQAVLQLGVNNEDSKSLEKVLVEF 179


>gi|5729986 processing of precursor 4 [Homo sapiens]
          Length = 220

 Score = 33.1 bits (74), Expect = 0.20
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query: 78  PEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASV 129
           PE+Q  +L   +H L +Q +R   + LKPDT    +Q   +  DL G + SV
Sbjct: 91  PEQQRYSLFLPLHELWKQYIRDLCSGLKPDTQPQMIQAKLLKADLHGAIISV 142


>gi|41393583 EGF-like-domain, multiple 7 [Homo sapiens]
          Length = 273

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALR--LP-PTSLKPDTFR 110
           +E VQRL    +L EE+L  +LA +H+L  QAL   LP P SL   +F+
Sbjct: 197 KEEVQRLQSRVDLLEEKLQLVLAPLHSLASQALEHGLPDPGSLLVHSFQ 245


>gi|7705889 EGF-like-domain, multiple 7 [Homo sapiens]
          Length = 273

 Score = 31.2 bits (69), Expect = 0.75
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 65  REAVQRLGVSANLPEEQLGALLAGMHTLLQQALR--LP-PTSLKPDTFR 110
           +E VQRL    +L EE+L  +LA +H+L  QAL   LP P SL   +F+
Sbjct: 197 KEEVQRLQSRVDLLEEKLQLVLAPLHSLASQALEHGLPDPGSLLVHSFQ 245


>gi|45333909 COMM domain containing 6 isoform a [Homo sapiens]
          Length = 98

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
           + DF+W++ +A+S+        P V + LK++D S       FE+   +FQ
Sbjct: 19  LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69


>gi|45333906 COMM domain containing 6 isoform b [Homo sapiens]
          Length = 85

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 4/51 (7%)

Query: 152 VADFRWRVDVAISTSALARSLQPSVLMQLKLSDGSAY----RFEVPTAKFQ 198
           + DF+W++ +A+S+        P V + LK++D S       FE+   +FQ
Sbjct: 19  LVDFQWKLGMAVSSDTCRSLKYPYVAVMLKVADHSGQVKTKCFEMTIPQFQ 69


>gi|118640870 ADP-ribosyltransferase 5 precursor [Homo sapiens]
          Length = 291

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 82  LGALLAGMHTLLQQALRLPPTSLKPDTFRD 111
           LG+L  G+HT   QA+ + P  L PDTF D
Sbjct: 10  LGSL--GLHTWQAQAVPILPLGLAPDTFDD 37


>gi|30089992 ADP-ribosyltransferase 5 precursor [Homo sapiens]
          Length = 291

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 82  LGALLAGMHTLLQQALRLPPTSLKPDTFRD 111
           LG+L  G+HT   QA+ + P  L PDTF D
Sbjct: 10  LGSL--GLHTWQAQAVPILPLGLAPDTFDD 37


>gi|8923458 COMM domain containing 8 [Homo sapiens]
          Length = 183

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 31/146 (21%)

Query: 73  VSANLPEEQLGALLAGMHTLLQQALRLPPTSLKPDTFRDQLQELCIPQDLVGDLASVVFG 132
           V  NLP+E++   L  +++L Q+ +     S K +          I Q L  ++ ++   
Sbjct: 66  VGKNLPDEEIFQQLNQLNSLHQETIMKCVKSRKDE----------IKQALSREIVAI--- 112

Query: 133 SQRPLLDSVAQQQGAWLPHVADFRWRVDVAISTSALARSLQPSVLMQLKLSDG---SAYR 189
                  S AQ Q        DF W+V +A+S+  +A    P + + L + +      Y 
Sbjct: 113 -------SSAQLQ--------DFDWQVKLALSSDKIAALRMPLLSLHLDVKENGEVKPYS 157

Query: 190 FEVPTAKFQELRYSVALVLKEMADLE 215
            E+   + Q L  S+    K +  L+
Sbjct: 158 IEMSREELQNLIQSLEAANKVVLQLK 183


>gi|238859593 UDP-glucose ceramide glucosyltransferase-like 2 [Homo
           sapiens]
          Length = 1516

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 3/76 (3%)

Query: 33  VAAMARLLGDLDRSTFRK---LLKFVVSSLQGEDCREAVQRLGVSANLPEEQLGALLAGM 89
           + +  R LG LD   + +   LL+ +  S  GE  +  V+ +G++AN   + +  + A M
Sbjct: 873 IVSNGRFLGPLDEDFYAEDFYLLEKITFSNLGEKIKGIVENMGINANNMSDFIMKVDALM 932

Query: 90  HTLLQQALRLPPTSLK 105
            ++ ++A R   T L+
Sbjct: 933 SSVPKRASRYDVTFLR 948


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,085,616
Number of Sequences: 37866
Number of extensions: 315498
Number of successful extensions: 801
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 22
length of query: 224
length of database: 18,247,518
effective HSP length: 98
effective length of query: 126
effective length of database: 14,536,650
effective search space: 1831617900
effective search space used: 1831617900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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