Guide to the Human Genome
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Name: COMMD6 Sequence: fasta or formatted (85aa) NCBI GI: 45333906
Description:

COMM domain containing 6 isoform b

Referenced in:

Additional Interaction Domain Families

Other entries for this name:
alt prot [98aa] COMM domain containing 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2          7           2
 C cysteine            2.4          2           1
 D aspartate           5.9          5           1
 E glutamate           5.9          5           1
 F phenylalanine       5.9          5           1
 G glycine             2.4          2           1
 H histidine           1.2          1           1
 I isoleucine          3.5          3           1
 K lysine              8.2          7           1
 L leucine             5.9          5           1
 M methionine          4.7          4           1
 N asparagine          2.4          2           1
 P proline             4.7          4           2
 Q glutamine           7.1          6           1
 R arginine            2.4          2           1
 S serine              8.2          7           2
 T threonine           5.9          5           1
 V valine             10.6          9           1
 W tryptophan          1.2          1           1
 Y tyrosine            3.5          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   COMM domain containing 6 isoform b 
COMMD6                0.939   COMM domain containing 6 isoform a 
COMMD8                0.108   COMM domain containing 8 
COMMD7                0.095   COMM domain containing 7 isoform 1 
COMMD7                0.095   COMM domain containing 7 isoform 2 
COMMD5                0.020   COMM domain containing 5 
COMMD5                0.020   COMM domain containing 5 
COMMD5                0.020   COMM domain containing 5 
LOC441016             0.014   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.014   PREDICTED: similar to COMM domain containing 5 [Hom...
LOC441016             0.014   PREDICTED: similar to COMM domain containing 5 [Hom...
RBM7                  0.014   RNA binding motif protein 7 
COMMD4                0.014   COMM domain containing 4 
KLHL7                 0.007   kelch-like 7 isoform 1 
KLHL7                 0.007   kelch-like 7 isoform 2 
GBF1                  0.007   golgi-specific brefeldin A resistant guanine nucleoti...
COMMD9                0.007   COMM domain containing 9 isoform 2 
COMMD9                0.007   COMM domain containing 9 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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