Search of human proteins with 15431293

Search of human proteins with 15431293

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|15431293 ribosomal protein L15 [Homo sapiens]
         (204 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|15431293 ribosomal protein L15 [Homo sapiens]                      429   e-121
gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]         32   0.29 
gi|239756530 PREDICTED: hypothetical protein [Homo sapiens]            32   0.49 
gi|22749049 Leber congenital amaurosis 5-like [Homo sapiens]           30   1.1  
gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2...    28   4.1  
gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1...    28   4.1  
gi|226823326 methenyltetrahydrofolate synthetase domain containi...    28   5.4  
gi|226823324 methenyltetrahydrofolate synthetase domain containi...    28   5.4  
gi|226823322 methenyltetrahydrofolate synthetase domain containi...    28   5.4  
gi|226823319 methenyltetrahydrofolate synthetase domain containi...    28   5.4  
gi|116875838 methenyltetrahydrofolate synthetase domain containi...    28   5.4  
gi|4504483 hypoxanthine phosphoribosyltransferase 1 [Homo sapiens]     28   5.4  
gi|153082755 interferon-induced protein with tetratricopeptide r...    28   5.4  
gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]      27   9.2  

>gi|15431293 ribosomal protein L15 [Homo sapiens]
          Length = 204

 Score =  429 bits (1104), Expect = e-121
 Identities = 204/204 (100%), Positives = 204/204 (100%)

Query: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
           MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
           IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180
           VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF
Sbjct: 121 VGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGLGKGHKF 180

Query: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204
           HHTIGGSRRAAWRRRNTLQLHRYR
Sbjct: 181 HHTIGGSRRAAWRRRNTLQLHRYR 204


>gi|126723060 zinc finger CCCH-type containing 4 [Homo sapiens]
          Length = 1303

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 15/37 (40%), Positives = 25/37 (67%)

Query: 152 TKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSR 188
           TK ++++R  +  +S GR SRG G+G++   + GGSR
Sbjct: 221 TKELNQYRRAKEGSSRGRGSRGRGRGYRGRGSRGGSR 257


>gi|239756530 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 17/88 (19%)

Query: 9   ELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKA---RRLGYKAKQ--GYVIYR 63
           + W+K +  V        C Q  Q+ AL +   P   D     RR G K      +++  
Sbjct: 159 DAWQKAEPHV--------CQQEHQVEALQQGQGPGETDATAAERRAGGKDASLVQHLVPE 210

Query: 64  IRV--RRGGRKR--PVPKGATYGKPVHH 87
           +RV  RRGG  R  P P GA +   +HH
Sbjct: 211 VRVGGRRGGSSRDHPAPPGAYWAGQLHH 238


>gi|22749049 Leber congenital amaurosis 5-like [Homo sapiens]
          Length = 670

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 20/112 (17%)

Query: 97  SLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVH 156
           S +SV   R+   CG+L           S Y + E  L D   KAI RN    ++ +PV 
Sbjct: 45  SNKSVDYSRSQCSCGSL----------SSQYDYSEDFLCDCSEKAINRN----YLKQPVV 90

Query: 157 KHREMRGLT------SAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLHR 202
           K +E +         S G+K   + K H ++ ++  S+     +R     HR
Sbjct: 91  KEKEKKKYNVSKISQSKGQKEISVEKKHTWNASLFNSQIHMIAQRRDAMAHR 142


>gi|239743756 PREDICTED: hypothetical protein LOC389722 isoform 2
           [Homo sapiens]
          Length = 1207

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 66  VRRGGRKRPVPKGATYGKPVHH-------GVNQLKFARSLQSVAEERAGRHCGALRVLN- 117
           VR GG      +GA  G P+         G  QL+ A +L    E+R    CG  R  + 
Sbjct: 632 VRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLAERCEQRLALRCGTARRPDS 691

Query: 118 ------SYWVG 122
                 S+WVG
Sbjct: 692 RDGTPLSWWVG 702


>gi|239743754 PREDICTED: hypothetical protein LOC389722 isoform 1
           [Homo sapiens]
          Length = 1288

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 66  VRRGGRKRPVPKGATYGKPVHH-------GVNQLKFARSLQSVAEERAGRHCGALRVLN- 117
           VR GG      +GA  G P+         G  QL+ A +L    E+R    CG  R  + 
Sbjct: 633 VRHGGPDAVTLRGAPSGHPLSAVSFAYAAGAGQLRAAVNLAERCEQRLALRCGTARRPDS 692

Query: 118 ------SYWVG 122
                 S+WVG
Sbjct: 693 RDGTPLSWWVG 703


>gi|226823326 methenyltetrahydrofolate synthetase domain containing
           isoform 5 [Homo sapiens]
          Length = 363

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 59  YVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGR 108
           Y++   RV   G KRP P G T+ K     + ++   RSL++  E++AG+
Sbjct: 183 YILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRA-REQQAGK 231


>gi|226823324 methenyltetrahydrofolate synthetase domain containing
           isoform 4 [Homo sapiens]
          Length = 382

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 59  YVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGR 108
           Y++   RV   G KRP P G T+ K     + ++   RSL++  E++AG+
Sbjct: 202 YILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRA-REQQAGK 250


>gi|226823322 methenyltetrahydrofolate synthetase domain containing
           isoform 2 [Homo sapiens]
          Length = 383

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 59  YVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGR 108
           Y++   RV   G KRP P G T+ K     + ++   RSL++  E++AG+
Sbjct: 203 YILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRA-REQQAGK 251


>gi|226823319 methenyltetrahydrofolate synthetase domain containing
           isoform 1 [Homo sapiens]
          Length = 383

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 59  YVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGR 108
           Y++   RV   G KRP P G T+ K     + ++   RSL++  E++AG+
Sbjct: 203 YILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRA-REQQAGK 251


>gi|116875838 methenyltetrahydrofolate synthetase domain containing
           isoform 3 [Homo sapiens]
          Length = 382

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 59  YVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGR 108
           Y++   RV   G KRP P G T+ K     + ++   RSL++  E++AG+
Sbjct: 202 YILTPTRVIATGCKRPKPMGITWFKISLEMMEKIPILRSLRA-REQQAGK 250


>gi|4504483 hypoxanthine phosphoribosyltransferase 1 [Homo sapiens]
          Length = 218

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)

Query: 85  VHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRR 144
           + HG+   +  R  + V +E  G H  AL VL          YKFF  +L   + KA+ R
Sbjct: 37  IPHGLIMDRTERLARDVMKEMGGHHIVALCVLK-------GGYKFFADLL--DYIKALNR 87

Query: 145 NPD 147
           N D
Sbjct: 88  NSD 90


>gi|153082755 interferon-induced protein with tetratricopeptide
           repeats 2 [Homo sapiens]
          Length = 472

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 4/30 (13%)

Query: 135 IDPFHKAIRRNPDTQW----ITKPVHKHRE 160
           IDP  +AIR NPD Q+    +   +HK RE
Sbjct: 195 IDPLRQAIRLNPDNQYLKVLLALKLHKMRE 224


>gi|27735089 LSM11, U7 small nuclear RNA associated [Homo sapiens]
          Length = 360

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)

Query: 39  APRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHG 88
           AP P R  + RRL    ++G        R  GR R  P+      P+H G
Sbjct: 104 APDPERIQRLRRLMVAKEEGDGAAGAGRRGPGRSRKAPRNVLTRMPLHEG 153


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.139    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,283,201
Number of Sequences: 37866
Number of extensions: 371455
Number of successful extensions: 931
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 928
Number of HSP's gapped (non-prelim): 16
length of query: 204
length of database: 18,247,518
effective HSP length: 97
effective length of query: 107
effective length of database: 14,574,516
effective search space: 1559473212
effective search space used: 1559473212
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.