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Search of human proteins with 153792466
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|153792466 protein phosphatase 1, regulatory (inhibitor)
subunit 3B [Homo sapiens]
(285 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153792466 protein phosphatase 1, regulatory (inhibitor) subun... 587 e-168
gi|4885559 protein phosphatase 1, regulatory (inhibitor) subunit... 223 2e-58
gi|5453948 protein phosphatase 1, regulatory subunit 3D [Homo sa... 99 6e-21
gi|167614502 protein phosphatase 1, regulatory (inhibitor) subun... 82 5e-16
gi|223278393 protein phosphatase 1, regulatory (inhibitor) subun... 69 6e-12
gi|239757810 PREDICTED: similar to protein phosphatase 1, regula... 54 1e-07
gi|58761532 protein phosphatase 1, regulatory (inhibitor) subuni... 54 1e-07
gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b ... 32 0.49
gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a ... 32 0.49
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens] 30 1.9
gi|153090207 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090203 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090201 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090191 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090182 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|148540145 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090209 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090205 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090199 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090197 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090193 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090195 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090189 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090187 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|153090185 Golgi-localized syntaphilin-related protein isoform... 29 4.1
gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo s... 28 7.0
>gi|153792466 protein phosphatase 1, regulatory (inhibitor) subunit
3B [Homo sapiens]
Length = 285
Score = 587 bits (1514), Expect = e-168
Identities = 285/285 (100%), Positives = 285/285 (100%)
Query: 1 MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKVK 60
MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKVK
Sbjct: 1 MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKVK 60
Query: 61 KRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVLDFSQPSAD 120
KRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVLDFSQPSAD
Sbjct: 61 KRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVLDFSQPSAD 120
Query: 121 YLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYV 180
YLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYV
Sbjct: 121 YLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYV 180
Query: 181 KDTYAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRIIRAELKST 240
KDTYAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRIIRAELKST
Sbjct: 181 KDTYAGSDRDTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRIIRAELKST 240
Query: 241 QGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY 285
QGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY
Sbjct: 241 QGMTKPHSGPDLGISFDQFGSPRCSYGLFPEWPSYLGYEKLGPYY 285
>gi|4885559 protein phosphatase 1, regulatory (inhibitor) subunit 3C
[Homo sapiens]
Length = 317
Score = 223 bits (567), Expect = 2e-58
Identities = 113/263 (42%), Positives = 165/263 (62%), Gaps = 12/263 (4%)
Query: 32 KPLRPCIQLSSKNEASGMVAPAVQEKKVKKRVSFADNQGLALTMVKVFSEF-DDPL-DMP 89
KPL+ C+ + K++A + KKRV FAD++GL+LT + VFS+ ++P D+
Sbjct: 56 KPLKSCLNI--KHKAKSQNDWKCSHNQAKKRVVFADSKGLSLTAIHVFSDLPEEPAWDLQ 113
Query: 90 FNITELLDNIVSLTTAESESFVLDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTV 149
F++ +L D +L E ++ +LDF QPS DYL FR+ Q + VCLENC L+++ + GTV
Sbjct: 114 FDLLDLNDISSALKHHEEKNLILDFPQPSTDYLSFRSHFQKNFVCLENCSLQERTVTGTV 173
Query: 150 KVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERME 209
KV+N++FEK V+IR+TFD+WK+YTD C Y+K+ Y G+D DTFSF I LP I + +++E
Sbjct: 174 KVKNVSFEKKVQIRITFDSWKNYTDVDCVYMKNVYGGTDSDTFSFAIDLPPVIPTEQKIE 233
Query: 210 FAVYYECNGQTYWDSNRGKNYRIIRAELK--------STQGMTKPHSGPDLGISFDQFGS 261
F + Y NGQ +WD+N G+NYRI+ + K + Q + P + FGS
Sbjct: 234 FCISYHANGQVFWDNNDGQNYRIVHVQWKPDGVQTQMAPQDCAFHQTSPKTELESTIFGS 293
Query: 262 PRCSYGLFPEWPSYLGYEKLGPY 284
PR + GLFPEW S+ E L Y
Sbjct: 294 PRLASGLFPEWQSWGRMENLASY 316
>gi|5453948 protein phosphatase 1, regulatory subunit 3D [Homo
sapiens]
Length = 299
Score = 98.6 bits (244), Expect = 6e-21
Identities = 64/179 (35%), Positives = 89/179 (49%), Gaps = 7/179 (3%)
Query: 60 KKRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVL-----DF 114
K RV FAD GL L VKVF+ DDP ++ L N +++ F L DF
Sbjct: 100 KLRVRFADALGLELAQVKVFNAGDDPSVPLHVLSRLAINSDLCCSSQDLEFTLHCLVPDF 159
Query: 115 SQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTD 174
P + DF RLQ VCLE D I+GTV+V N+AFEK V +R TF W+S +
Sbjct: 160 PPP-VEAADFGERLQRQLVCLERVTCSDLGISGTVRVCNVAFEKQVAVRYTFSGWRSTHE 218
Query: 175 FPCQYVKDTYAGSDRDTFSFDISLPE-KIQSYERMEFAVYYECNGQTYWDSNRGKNYRI 232
++ D F+F +P ++ R+ FAV Y+ G YWD+N ++Y +
Sbjct: 219 AVARWRGPAGPEGTEDVFTFGFPVPPFLLELGSRVHFAVRYQVAGAEYWDNNDHRDYSL 277
>gi|167614502 protein phosphatase 1, regulatory (inhibitor) subunit
3A [Homo sapiens]
Length = 1122
Score = 82.0 bits (201), Expect = 5e-16
Identities = 59/189 (31%), Positives = 93/189 (49%), Gaps = 10/189 (5%)
Query: 61 KRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVLDFSQPSAD 120
+RVSFAD+ G L VK F ++ P + + D + E F PS+
Sbjct: 62 RRVSFADSFGFNLVSVKEFDCWELP-----SASTTFDLGTDIFHTEEYVLAPLFDLPSSK 116
Query: 121 YLDFRNRLQADHVCLENC--VLKDKAIAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQ 178
D +LQ LE+ +L +I G ++V N++FEK V +RM+ D W+++ D +
Sbjct: 117 E-DLMQQLQIQKAILESTESLLGSTSIKGIIRVLNVSFEKLVYVRMSLDDWQTHYDILAE 175
Query: 179 YVKDTYAGSDRDTFSFDISL-PEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRIIRAEL 237
YV ++ G + D FSF I L P + ++EF + YE + T+W +N G NY I +
Sbjct: 176 YVPNSCDG-ETDQFSFKIVLVPPYQKDGSKVEFCIRYETSVGTFWSNNNGTNYTFICQKK 234
Query: 238 KSTQGMTKP 246
+ KP
Sbjct: 235 EQEPEPVKP 243
>gi|223278393 protein phosphatase 1, regulatory (inhibitor) subunit
3G [Homo sapiens]
Length = 358
Score = 68.6 bits (166), Expect = 6e-12
Identities = 64/245 (26%), Positives = 92/245 (37%), Gaps = 52/245 (21%)
Query: 38 IQLSSKNEASGMVAPAVQEKKVKKRVSFADNQGLALTMVKVFSEFDDPLDMPFNITEL-- 95
+ L + + P K KKRV FAD GL+L VK FSE ++P P ++ L
Sbjct: 107 VALGGEGAEDAQLGPGGCCAKCKKRVQFADTLGLSLASVKHFSEAEEPQVPPAVLSRLRS 166
Query: 96 -------LDNIVSLTTAESESFVLD---------FSQPSADYLDFRNRLQADHVCLE--N 137
L+ + L A + + L F P RLQ VCLE
Sbjct: 167 FPMRAEDLEQLGGLLAAAAVAAPLSAPPSRLRPLFQLPGPSAA--AERLQRQRVCLERVQ 224
Query: 138 CVLKDKA-IAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYVK--------------- 181
C A + G+ +V + + V +R TF W+S+ D P +
Sbjct: 225 CSTASGAEVKGSGRVLSCPGPRAVTVRYTFTEWRSFLDVPAELQPEPLEPQQPEAPSGAS 284
Query: 182 -----DTYAGSDRDTFSFDISLPEKIQSYER---------MEFAVYYECNGQTYWDSNRG 227
D + F F + LP +Q + + FAV Y C YWD+N G
Sbjct: 285 EPGSGDAKKEPGAECFHFSLCLPPGLQPEDEEDADERGVAVHFAVCYRCAQGEYWDNNAG 344
Query: 228 KNYRI 232
NY +
Sbjct: 345 ANYTL 349
>gi|239757810 PREDICTED: similar to protein phosphatase 1,
regulatory (inhibitor) subunit 3F [Homo sapiens]
Length = 724
Score = 54.3 bits (129), Expect = 1e-07
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 32/121 (26%)
Query: 145 IAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYV--KDTYAGSD-------------- 188
+ G V+V N +FEK V +R + D W S+ D P +YV +AG+
Sbjct: 164 LRGLVRVLNRSFEKAVHVRASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGLG 223
Query: 189 ----------------RDTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRI 232
D F+F + E R++F V YE T+W +N G+NY +
Sbjct: 224 LGPGQASASSPDDGGRTDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTV 283
Query: 233 I 233
+
Sbjct: 284 L 284
>gi|58761532 protein phosphatase 1, regulatory (inhibitor) subunit
3F [Homo sapiens]
Length = 799
Score = 54.3 bits (129), Expect = 1e-07
Identities = 33/121 (27%), Positives = 51/121 (42%), Gaps = 32/121 (26%)
Query: 145 IAGTVKVQNLAFEKTVKIRMTFDTWKSYTDFPCQYV--KDTYAGSD-------------- 188
+ G V+V N +FEK V +R + D W S+ D P +YV +AG+
Sbjct: 164 LRGLVRVLNRSFEKAVHVRASHDGWASFCDHPARYVPRSPPWAGAGGTGAGDPILDPGLG 223
Query: 189 ----------------RDTFSFDISLPEKIQSYERMEFAVYYECNGQTYWDSNRGKNYRI 232
D F+F + E R++F V YE T+W +N G+NY +
Sbjct: 224 LGPGQASASSPDDGGRTDRFAFQLPFAEGAGDGARLDFVVRYETPEGTFWANNHGRNYTV 283
Query: 233 I 233
+
Sbjct: 284 L 284
>gi|75677374 SLIT-ROBO Rho GTPase activating protein 3 isoform b [Homo
sapiens]
Length = 1075
Score = 32.3 bits (72), Expect = 0.49
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 PSLRQERFAFKISPKPSKPLRPCIQ-LSSKNEASGMVAPAVQEKKVKKRVSFADNQG 70
P+L ++ P P +P+RP +Q SS + +SG+ +PAV + S AD G
Sbjct: 1017 PALSARLAGAQLRPPPMRPVRPVVQHRSSSSSSSGVGSPAVTPTEKMFPNSSADKSG 1073
>gi|24307967 SLIT-ROBO Rho GTPase activating protein 3 isoform a [Homo
sapiens]
Length = 1099
Score = 32.3 bits (72), Expect = 0.49
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 15 PSLRQERFAFKISPKPSKPLRPCIQ-LSSKNEASGMVAPAVQEKKVKKRVSFADNQG 70
P+L ++ P P +P+RP +Q SS + +SG+ +PAV + S AD G
Sbjct: 1041 PALSARLAGAQLRPPPMRPVRPVVQHRSSSSSSSGVGSPAVTPTEKMFPNSSADKSG 1097
>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
Length = 5120
Score = 30.4 bits (67), Expect = 1.9
Identities = 34/172 (19%), Positives = 62/172 (36%), Gaps = 7/172 (4%)
Query: 1 MMAVDIEYRYNCMAPSLRQERFAFKISPKPSKPLRPCIQLSSKNEASGMVAPAVQEKKVK 60
+MAV+I + L ++ +++ KP+ L+P Q + S + +
Sbjct: 1035 VMAVNITCEFVAPLIQLSTKQLIYRLEKKPNSILKPDYQPLAIKNISTLPVNLLLSTSGP 1094
Query: 61 KRVSFADNQGLALTMVKVFSEFDDPLDMPFNITELLDNIVSLTTAESESFVLDFSQPSAD 120
+ D L T + E D+ ++ N ++ AE + P D
Sbjct: 1095 FFICETDKSLLPATPEPIKLEIDEEKNLLIKFDPSYRNDLNNWVAEEILAIKYVEHPQID 1154
Query: 121 YLDFRNRLQADHVCLE------NCVLKDKAIAGTVKVQNLAFEKTVKIRMTF 166
LD R + ++ E C+L D + V + N + VK R F
Sbjct: 1155 SLDLRGEVHYPNLSFETKELDFGCILNDTELIRYVTITNCS-PLVVKFRWFF 1205
>gi|153090207 Golgi-localized syntaphilin-related protein isoform c
[Homo sapiens]
Length = 660
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 434 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 466
>gi|153090203 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 436 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 468
>gi|153090201 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 436 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 468
>gi|153090191 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 436 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 468
>gi|153090182 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 436 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 468
>gi|148540145 Golgi-localized syntaphilin-related protein isoform b
[Homo sapiens]
Length = 662
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 436 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 468
>gi|153090209 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 318 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 350
>gi|153090205 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 437 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 469
>gi|153090199 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 437 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 469
>gi|153090197 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 437 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 469
>gi|153090193 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 318 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 350
>gi|153090195 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 437 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 469
>gi|153090189 Golgi-localized syntaphilin-related protein isoform d
[Homo sapiens]
Length = 544
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 318 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 350
>gi|153090187 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 437 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 469
>gi|153090185 Golgi-localized syntaphilin-related protein isoform a
[Homo sapiens]
Length = 663
Score = 29.3 bits (64), Expect = 4.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 91 NITELLDNIVSLTTAESESFVLDFSQPSADYLD 123
N T+L D IV+ TT ES L S P A+ L+
Sbjct: 437 NSTDLFDEIVTATTTESGDLELVHSTPGANVLE 469
>gi|221307575 Rho-type GTPase-activating protein FLJ32810 [Homo
sapiens]
Length = 874
Score = 28.5 bits (62), Expect = 7.0
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 112 LDFSQPSADYLDFRNRLQADHVCLENCVLKDKAIAGTVKVQNLAFEKTVKIRMTFDTW-K 170
L+FS D DFR RLQ + LE +K I +K +L + M + +
Sbjct: 6 LEFSDSYLDSPDFRERLQCHEIELER---TNKFIKELIKDGSLLIGALRNLSMAVQKFSQ 62
Query: 171 SYTDFPCQYVKDTYAGSDRDTFSFDISLPEKIQSYERMEFAVYYE 215
S DF + + D +IS+ + ++ + R+ AV E
Sbjct: 63 SLQDFQFECIGDAETDD-------EISIAQSLKEFARLLIAVEEE 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,747,169
Number of Sequences: 37866
Number of extensions: 455982
Number of successful extensions: 1014
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 28
length of query: 285
length of database: 18,247,518
effective HSP length: 101
effective length of query: 184
effective length of database: 14,423,052
effective search space: 2653841568
effective search space used: 2653841568
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.