Search of human proteins with 150170706

Search of human proteins with 150170706

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|150170706 anaphase promoting complex subunit 10 [Homo
sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|150170706 anaphase promoting complex subunit 10 [Homo sapiens]     385   e-108
gi|157738609 HECT domain containing 3 [Homo sapiens]                   54   6e-08
gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo sap...    51   6e-07
gi|41872646 cullin 7 [Homo sapiens]                                    46   2e-05
gi|126032348 hect domain and RLD 2 [Homo sapiens]                      42   4e-04
gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo...    42   4e-04
gi|21389361 proline racemase-like [Homo sapiens]                       29   2.0  

>gi|150170706 anaphase promoting complex subunit 10 [Homo sapiens]
          Length = 185

 Score =  385 bits (990), Expect = e-108
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ 60
           MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ
Sbjct: 1   MTTPNKTPPGADPKQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ 60

Query: 61  PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI 120
           PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI
Sbjct: 61  PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWI 120

Query: 121 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM 180
           HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM
Sbjct: 121 HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTPVEESSIGKFPRCTTIDFMM 180

Query: 181 YRSIR 185
           YRSIR
Sbjct: 181 YRSIR 185


>gi|157738609 HECT domain containing 3 [Homo sapiens]
          Length = 861

 Score = 54.3 bits (129), Expect = 6e-08
 Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 26/155 (16%)

Query: 14  KQLERTGTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ-PHLVNIQFRRKT 72
           K+ E  G+V++        +SS    F V  L D N +TYW+SDGSQ  H V +  ++ T
Sbjct: 232 KEDENLGSVKQYVESI--DVSSYTEEFNVSCLTDSNADTYWESDGSQCQHWVRLTMKKGT 289

Query: 73  TVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVE---------PSGWIHVP 123
            VK L +  D  +D+++ P ++ V  G    NL+++  + + E             +H+P
Sbjct: 290 IVKKLLLTVD-TTDDNFMPKRVVV-YGGEGDNLKKLSDVSIDETLIGDVCVLEDMTVHLP 347

Query: 124 LTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKI 158
           +            I+I ++    +G D  +R +KI
Sbjct: 348 I------------IEIRIVECRDDGIDVRLRGVKI 370


>gi|73747881 zinc finger, ZZ type with EF hand domain 1 [Homo
           sapiens]
          Length = 2961

 Score = 50.8 bits (120), Expect = 6e-07
 Identities = 34/118 (28%), Positives = 62/118 (52%), Gaps = 7/118 (5%)

Query: 42  VDQLRDDNLETYWQSDGSQ-PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGN 100
           +D++ +    +YWQSDGS   H + ++ +    ++ L I A   +D+SY P +++V VG 
Sbjct: 265 IDKMTNGETSSYWQSDGSACSHWIRLKMKPDVVLRHLSI-AVAATDQSYMPQQVTVAVGR 323

Query: 101 NFHNLQEIRQLELVEPSGWI-HVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIK 157
           N  +LQE+R + +  PS    +V L +N         +QI +     +G DT +  ++
Sbjct: 324 NASDLQEVRDVHI--PSNVTGYVTLLENAN--VSQLYVQINIKRCLSDGCDTRIHGLR 377


>gi|41872646 cullin 7 [Homo sapiens]
          Length = 1698

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 7/120 (5%)

Query: 44  QLRDDNLETYWQSDGSQ-PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF 102
           +L D N +TYW+S+GS   H + +  RR   ++ L +      D SY P+++ V  G++ 
Sbjct: 855 KLTDHNPKTYWESNGSAGSHYITLHMRRGILIRQLTLLV-ASEDSSYMPARVVVCGGDST 913

Query: 103 HNLQEIRQLELVEPSGWIHVPLTDNHKKPTRTF-MIQIAVLANHQNGRDTHMRQIKIYTP 161
            +L        V PS    V L +N    TR + +IQI +    Q G DT +R ++I  P
Sbjct: 914 SSLHTELNSVNVMPSA-SRVILLEN---LTRFWPIIQIRIKRCQQGGIDTRIRGLEILGP 969


>gi|126032348 hect domain and RLD 2 [Homo sapiens]
          Length = 4834

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 45/147 (30%), Positives = 70/147 (47%), Gaps = 12/147 (8%)

Query: 10   GADPKQLERT-----GTVREIGSQAVWSLSSCKPGFGVDQLRDDNLETYWQSDGSQ-PHL 63
            G   KQL+R      G + +  S+ V SL+         +L D + E  WQS GSQ  H 
Sbjct: 2761 GRSGKQLKRCHSSQPGMLLDSWSRMVKSLNVSSSVNQASRLIDGS-EPCWQSSGSQGKHW 2819

Query: 64   VNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNFHNLQEIRQLELVEPSGWIHVP 123
            + ++      V  L +  D  +D SY PS + V  GN+ +NL E++ +  + PS    VP
Sbjct: 2820 IRLEIFPDVLVHRLKMIVD-PADSSYMPSLVVVSGGNSLNNLIELKTIN-INPSD-TTVP 2876

Query: 124  LTDNHKKPTRTFMIQIAVLANHQNGRD 150
            L ++  +  R   I+IA+     +G D
Sbjct: 2877 LLNDCTEYHR--YIEIAIKQCRSSGID 2901


>gi|24307991 p53-associated parkin-like cytoplasmic protein [Homo
            sapiens]
          Length = 2517

 Score = 41.6 bits (96), Expect = 4e-04
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 44   QLRDDNLETYWQSDGSQ-PHLVNIQFRRKTTVKTLCIYADYKSDESYTPSKISVRVGNNF 102
            +L D N +TYW+S+GS   H + +   R   V+ L +      D SY P+++ V  G++ 
Sbjct: 1184 KLTDHNPKTYWESNGSTGSHYITLHMHRGVLVRQLTLLV-ASEDSSYMPARVVVFGGDST 1242

Query: 103  HNL-QEIRQLELVEPSGWIHVPLTDNHKKPTRTFMIQIAVLANHQNGRDTHMRQIKIYTP 161
              +  E+  + ++  +  + +    N   P    +IQI +    Q G DT +R +++  P
Sbjct: 1243 SCIGTELNTVNVMPSASRVILLENLNRFWP----IIQIRIKRCQQGGIDTRVRGVEVLGP 1298


>gi|21389361 proline racemase-like [Homo sapiens]
          Length = 354

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 71  KTTVKTLCIYADYKSDESYTPSKISVRVGNNFH-NLQEIRQLELVEPS 117
           K     +C++AD + D S T S ++ R+   +H  L E+ Q+   + S
Sbjct: 254 KEPTTNICVFADEQVDRSPTGSGVTARIALQYHKGLLELNQMRAFKSS 301


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,646,628
Number of Sequences: 37866
Number of extensions: 315322
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 7
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.