Search of human proteins with 148728170

Search of human proteins with 148728170

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c
[Homo sapiens]
         (133 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [H...   270   2e-73
gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [H...   201   1e-52
gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [H...   201   1e-52
gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [H...   201   1e-52
gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [H...   201   1e-52
gi|4502419 biliverdin reductase B (flavin reductase (NADPH)) [Ho...    31   0.33 
gi|110349719 titin isoform N2-A [Homo sapiens]                         27   4.8  
gi|110349717 titin isoform novex-2 [Homo sapiens]                      27   4.8  
gi|110349713 titin isoform novex-1 [Homo sapiens]                      27   4.8  
gi|110349715 titin isoform N2-B [Homo sapiens]                         27   4.8  

>gi|148728170 HIV-1 Tat interactive protein 2, 30kDa isoform c [Homo
           sapiens]
          Length = 133

 Score =  270 bits (690), Expect = 2e-73
 Identities = 133/133 (100%), Positives = 133/133 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAVRKAYALFPFCWPVISRIL 120
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAVRKAYALFPFCWPVISRIL
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAVRKAYALFPFCWPVISRIL 120

Query: 121 FLLTLFLCACCNA 133
           FLLTLFLCACCNA
Sbjct: 121 FLLTLFLCACCNA 133


>gi|148728172 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
           sapiens]
          Length = 242

 Score =  201 bits (512), Expect = 1e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101


>gi|148728168 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
           sapiens]
          Length = 242

 Score =  201 bits (512), Expect = 1e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101


>gi|148728166 HIV-1 Tat interactive protein 2, 30kDa isoform a [Homo
           sapiens]
          Length = 276

 Score =  201 bits (512), Expect = 1e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 35  MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 94

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 95  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 135


>gi|148728164 HIV-1 Tat interactive protein 2, 30kDa isoform b [Homo
           sapiens]
          Length = 242

 Score =  201 bits (512), Expect = 1e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60
           MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE
Sbjct: 1   MAETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE 60

Query: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101
           AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA
Sbjct: 61  AYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGA 101


>gi|4502419 biliverdin reductase B (flavin reductase (NADPH))
          [Homo sapiens]
          Length = 206

 Score = 30.8 bits (68), Expect = 0.33
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 2/79 (2%)

Query: 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKL 75
          M  K + I GA+G+TG   L + ++ G   +VT++ R       E  +  +  V D  + 
Sbjct: 1  MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPSEGPRPAHVVVGDVLQA 58

Query: 76 DDYASAFQGHDVGFCCLGT 94
           D      G D     LGT
Sbjct: 59 ADVDKTVAGQDAVIVLLGT 77


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 56    TFDEEAYKNVNQEVVDF 72
             TFDEEA+K ++ E +DF
Sbjct: 31465 TFDEEAFKEISIEAMDF 31481


>gi|110349717 titin isoform novex-2 [Homo sapiens]
          Length = 27118

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 56    TFDEEAYKNVNQEVVDF 72
             TFDEEA+K ++ E +DF
Sbjct: 25160 TFDEEAFKEISIEAMDF 25176


>gi|110349713 titin isoform novex-1 [Homo sapiens]
          Length = 27051

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 56    TFDEEAYKNVNQEVVDF 72
             TFDEEA+K ++ E +DF
Sbjct: 25093 TFDEEAFKEISIEAMDF 25109


>gi|110349715 titin isoform N2-B [Homo sapiens]
          Length = 26926

 Score = 26.9 bits (58), Expect = 4.8
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 56    TFDEEAYKNVNQEVVDF 72
             TFDEEA+K ++ E +DF
Sbjct: 24968 TFDEEAFKEISIEAMDF 24984


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,230,579
Number of Sequences: 37866
Number of extensions: 161947
Number of successful extensions: 495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 10
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.