Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 148612805
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|148612805 pigeon homolog [Homo sapiens]
(854 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|148612805 pigeon homolog [Homo sapiens] 1741 0.0
gi|46049063 exportin 6 [Homo sapiens] 31 5.6
gi|65301141 PH domain and leucine rich repeat protein phosphatas... 30 7.3
gi|21362096 hypothetical protein LOC64773 [Homo sapiens] 30 7.3
gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens] 30 9.5
gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens] 30 9.5
gi|226371718 poly (ADP-ribose) polymerase family, member 9 isofo... 30 9.5
gi|226371716 poly (ADP-ribose) polymerase family, member 9 isofo... 30 9.5
gi|226371714 poly (ADP-ribose) polymerase family, member 9 isofo... 30 9.5
gi|226371712 poly (ADP-ribose) polymerase family, member 9 isofo... 30 9.5
gi|226371710 poly (ADP-ribose) polymerase family, member 9 isofo... 30 9.5
gi|226371706 poly (ADP-ribose) polymerase family, member 9 isofo... 30 9.5
>gi|148612805 pigeon homolog [Homo sapiens]
Length = 854
Score = 1741 bits (4509), Expect = 0.0
Identities = 854/854 (100%), Positives = 854/854 (100%)
Query: 1 MALRLVADFDLGKDVLPWLRAQRAVSEASGAGSGGADVLENDYESLHVLNVERNGNIIYT 60
MALRLVADFDLGKDVLPWLRAQRAVSEASGAGSGGADVLENDYESLHVLNVERNGNIIYT
Sbjct: 1 MALRLVADFDLGKDVLPWLRAQRAVSEASGAGSGGADVLENDYESLHVLNVERNGNIIYT 60
Query: 61 YKDDKGNVVFGLYDCQTRQNELLYTFEKDLQVFSCSVNSERTLLAASLVQSTKEGKRNEL 120
YKDDKGNVVFGLYDCQTRQNELLYTFEKDLQVFSCSVNSERTLLAASLVQSTKEGKRNEL
Sbjct: 61 YKDDKGNVVFGLYDCQTRQNELLYTFEKDLQVFSCSVNSERTLLAASLVQSTKEGKRNEL 120
Query: 121 QPGSKCLTLLVEIHPVNNVKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKYIEQF 180
QPGSKCLTLLVEIHPVNNVKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKYIEQF
Sbjct: 121 QPGSKCLTLLVEIHPVNNVKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKYIEQF 180
Query: 181 RIHVAQEDGNRVVIKNSGHLPRDRIAEDFVWAQWDMSEQRLYYIDLKKSRSILKCIQFYA 240
RIHVAQEDGNRVVIKNSGHLPRDRIAEDFVWAQWDMSEQRLYYIDLKKSRSILKCIQFYA
Sbjct: 181 RIHVAQEDGNRVVIKNSGHLPRDRIAEDFVWAQWDMSEQRLYYIDLKKSRSILKCIQFYA 240
Query: 241 DESYNLMFEVPLDISLSNSGFKLVNFGCDYHQYRDKFSKHLTLCVFTNHTGSLCVCYSPK 300
DESYNLMFEVPLDISLSNSGFKLVNFGCDYHQYRDKFSKHLTLCVFTNHTGSLCVCYSPK
Sbjct: 241 DESYNLMFEVPLDISLSNSGFKLVNFGCDYHQYRDKFSKHLTLCVFTNHTGSLCVCYSPK 300
Query: 301 CASWGQITYSVFYIHKGHSKTFTTSLENVGSHMTKGITFLNLDYYVAVYLPGHFFHLLNV 360
CASWGQITYSVFYIHKGHSKTFTTSLENVGSHMTKGITFLNLDYYVAVYLPGHFFHLLNV
Sbjct: 301 CASWGQITYSVFYIHKGHSKTFTTSLENVGSHMTKGITFLNLDYYVAVYLPGHFFHLLNV 360
Query: 361 QHPDLICHNLFLTGNNEMIDMLPHCPLQSLSGSLVLDCCSGKLYRALLSQSSLLQLLQNT 420
QHPDLICHNLFLTGNNEMIDMLPHCPLQSLSGSLVLDCCSGKLYRALLSQSSLLQLLQNT
Sbjct: 361 QHPDLICHNLFLTGNNEMIDMLPHCPLQSLSGSLVLDCCSGKLYRALLSQSSLLQLLQNT 420
Query: 421 CLDCEKMAALHCALYCGQGAQFLEAQIIQWISENVSACHSFDLIQEFIIASSYWSVYSET 480
CLDCEKMAALHCALYCGQGAQFLEAQIIQWISENVSACHSFDLIQEFIIASSYWSVYSET
Sbjct: 421 CLDCEKMAALHCALYCGQGAQFLEAQIIQWISENVSACHSFDLIQEFIIASSYWSVYSET 480
Query: 481 SNMDKLLPHSSVLTWNTEIPGITLVTEDIALPLMKVLSFKGYWEKLNSNLEYVKYAKPHF 540
SNMDKLLPHSSVLTWNTEIPGITLVTEDIALPLMKVLSFKGYWEKLNSNLEYVKYAKPHF
Sbjct: 481 SNMDKLLPHSSVLTWNTEIPGITLVTEDIALPLMKVLSFKGYWEKLNSNLEYVKYAKPHF 540
Query: 541 HYNNSVVRREWHNLISEEKTGKRRSAAYVRNILDNAVKVISNLEARNLGPRLTPLLQEED 600
HYNNSVVRREWHNLISEEKTGKRRSAAYVRNILDNAVKVISNLEARNLGPRLTPLLQEED
Sbjct: 541 HYNNSVVRREWHNLISEEKTGKRRSAAYVRNILDNAVKVISNLEARNLGPRLTPLLQEED 600
Query: 601 SHQRLLMGLMVSELKDHFLRHLQGVEKKKIEQMVLDYISKLLDLICHIVETNWRKHNLHS 660
SHQRLLMGLMVSELKDHFLRHLQGVEKKKIEQMVLDYISKLLDLICHIVETNWRKHNLHS
Sbjct: 601 SHQRLLMGLMVSELKDHFLRHLQGVEKKKIEQMVLDYISKLLDLICHIVETNWRKHNLHS 660
Query: 661 WVLHFNSRGSAAEFAVFHIMTRILEATNSLFLPLPPGFHTLHTILGVQCLPLHNLLHCID 720
WVLHFNSRGSAAEFAVFHIMTRILEATNSLFLPLPPGFHTLHTILGVQCLPLHNLLHCID
Sbjct: 661 WVLHFNSRGSAAEFAVFHIMTRILEATNSLFLPLPPGFHTLHTILGVQCLPLHNLLHCID 720
Query: 721 SGVLLLTETAVIRLMKDLDNTEKNEKLKFSIIVRLPPLIGQKICRLWDHPMSSNIISRNH 780
SGVLLLTETAVIRLMKDLDNTEKNEKLKFSIIVRLPPLIGQKICRLWDHPMSSNIISRNH
Sbjct: 721 SGVLLLTETAVIRLMKDLDNTEKNEKLKFSIIVRLPPLIGQKICRLWDHPMSSNIISRNH 780
Query: 781 VTRLLQNYKKQPRNSMINKSSFSVEFLPLNYFIEILTDIESSNQALYPFEGHDNVDAEFV 840
VTRLLQNYKKQPRNSMINKSSFSVEFLPLNYFIEILTDIESSNQALYPFEGHDNVDAEFV
Sbjct: 781 VTRLLQNYKKQPRNSMINKSSFSVEFLPLNYFIEILTDIESSNQALYPFEGHDNVDAEFV 840
Query: 841 EEAALKHTAMLLGL 854
EEAALKHTAMLLGL
Sbjct: 841 EEAALKHTAMLLGL 854
>gi|46049063 exportin 6 [Homo sapiens]
Length = 1125
Score = 30.8 bits (68), Expect = 5.6
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 622 LQGVEKKKIEQMVLDYISKLLDLICHIVETNWRKHNL 658
L K+++ +++LD + +L L+ I+ET W KH++
Sbjct: 164 LSVARKEELRKLLLDQVQTVLGLLTGILETVWDKHSV 200
>gi|65301141 PH domain and leucine rich repeat protein
phosphatase-like [Homo sapiens]
Length = 1323
Score = 30.4 bits (67), Expect = 7.3
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 12/72 (16%)
Query: 221 LYYIDLKKSRSILKCIQFYA---------DESYNLMFEVPLDISLSNSGFKLVNFGCDYH 271
L ++DL SR++L+C+ +A D SYNL+ EVP+ I LS+ + + G ++
Sbjct: 504 LTFLDL--SRNLLECVPDWACEAKKIEVLDVSYNLLTEVPVRI-LSSLSLRKLMLGHNHV 560
Query: 272 QYRDKFSKHLTL 283
Q +H+ L
Sbjct: 561 QNLPTLVEHIPL 572
>gi|21362096 hypothetical protein LOC64773 [Homo sapiens]
Length = 454
Score = 30.4 bits (67), Expect = 7.3
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 483 MDKLLPHSSVLTWNTEIPGITLVTEDIALPLMKVLSFKGYWEKLNSNLEYVKYAKP---- 538
MD++LP S +L WN +P +T LP ++ L+ + + N A
Sbjct: 168 MDQVLPDSCLLVWNMAMPLGERITGGFLLPELQPLAGSLRRDVVEGNFYSATLAGDHCFD 227
Query: 539 ----HFHYNNSVVRREWHNLISEEKTGKRRSAAYVRNILD 574
HFH+ ++V R + ++ + S + ++ D
Sbjct: 228 VLDLHFHFRHAVQHRHRDGVHWDQHAHRHLSHLLLTHVAD 267
>gi|53828918 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 30.0 bits (66), Expect = 9.5
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 89 DLQVFSCSVNSERTLLAASLVQSTKEGKRNELQPGSK-CL-----------TLLVEIHPV 136
D Q+F C ++ E++ + S ++S KE EL+P +K CL LL E +
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKE--LQELEPENKWCLLTIILLMRALDPLLYEKETL 405
Query: 137 NNVKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKYIEQFRIHVAQED 188
+ LKAVD + +L + S L EN +L + +Y E +H+A +D
Sbjct: 406 QYFQTLKAVDP-MRATYL-DDLRSKFLLENSVL---KMEYAEVRVLHLAHKD 452
>gi|33469951 Rab geranylgeranyltransferase alpha [Homo sapiens]
Length = 567
Score = 30.0 bits (66), Expect = 9.5
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 19/112 (16%)
Query: 89 DLQVFSCSVNSERTLLAASLVQSTKEGKRNELQPGSK-CL-----------TLLVEIHPV 136
D Q+F C ++ E++ + S ++S KE EL+P +K CL LL E +
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKE--LQELEPENKWCLLTIILLMRALDPLLYEKETL 405
Query: 137 NNVKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKYIEQFRIHVAQED 188
+ LKAVD + +L + S L EN +L + +Y E +H+A +D
Sbjct: 406 QYFQTLKAVDP-MRATYL-DDLRSKFLLENSVL---KMEYAEVRVLHLAHKD 452
>gi|226371718 poly (ADP-ribose) polymerase family, member 9 isoform
c [Homo sapiens]
Length = 710
Score = 30.0 bits (66), Expect = 9.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 86 FEKDLQV---FSCSVNSERTLLAA---SLVQSTKEGKR-NELQPGSKCLTLLVEIHPVNN 138
F DL++ FS + +L+ S+ QST+E KR N L+ S + L+
Sbjct: 434 FPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLM-------G 486
Query: 139 VKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKY 176
V + +++ W+Q + H + NH+L + +++
Sbjct: 487 FNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEH 524
>gi|226371716 poly (ADP-ribose) polymerase family, member 9 isoform
b [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 9.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 86 FEKDLQV---FSCSVNSERTLLAA---SLVQSTKEGKR-NELQPGSKCLTLLVEIHPVNN 138
F DL++ FS + +L+ S+ QST+E KR N L+ S + L+
Sbjct: 434 FPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLM-------G 486
Query: 139 VKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKY 176
V + +++ W+Q + H + NH+L + +++
Sbjct: 487 FNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEH 524
>gi|226371714 poly (ADP-ribose) polymerase family, member 9 isoform
b [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 9.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 86 FEKDLQV---FSCSVNSERTLLAA---SLVQSTKEGKR-NELQPGSKCLTLLVEIHPVNN 138
F DL++ FS + +L+ S+ QST+E KR N L+ S + L+
Sbjct: 434 FPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLM-------G 486
Query: 139 VKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKY 176
V + +++ W+Q + H + NH+L + +++
Sbjct: 487 FNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEH 524
>gi|226371712 poly (ADP-ribose) polymerase family, member 9 isoform
b [Homo sapiens]
Length = 819
Score = 30.0 bits (66), Expect = 9.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 86 FEKDLQV---FSCSVNSERTLLAA---SLVQSTKEGKR-NELQPGSKCLTLLVEIHPVNN 138
F DL++ FS + +L+ S+ QST+E KR N L+ S + L+
Sbjct: 434 FPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLM-------G 486
Query: 139 VKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKY 176
V + +++ W+Q + H + NH+L + +++
Sbjct: 487 FNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEH 524
>gi|226371710 poly (ADP-ribose) polymerase family, member 9 isoform
a [Homo sapiens]
Length = 854
Score = 30.0 bits (66), Expect = 9.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 86 FEKDLQV---FSCSVNSERTLLAA---SLVQSTKEGKR-NELQPGSKCLTLLVEIHPVNN 138
F DL++ FS + +L+ S+ QST+E KR N L+ S + L+
Sbjct: 469 FPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLM-------G 521
Query: 139 VKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKY 176
V + +++ W+Q + H + NH+L + +++
Sbjct: 522 FNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEH 559
>gi|226371706 poly (ADP-ribose) polymerase family, member 9 isoform
a [Homo sapiens]
Length = 854
Score = 30.0 bits (66), Expect = 9.5
Identities = 24/98 (24%), Positives = 46/98 (46%), Gaps = 14/98 (14%)
Query: 86 FEKDLQV---FSCSVNSERTLLAA---SLVQSTKEGKR-NELQPGSKCLTLLVEIHPVNN 138
F DL++ FS + +L+ S+ QST+E KR N L+ S + L+
Sbjct: 469 FPTDLEIYKAFSSEMAKRSKMLSLNNYSVPQSTREEKRENGLEARSPAINLM-------G 521
Query: 139 VKVLKAVDSYIWVQFLYPHIESHPLPENHLLLISEEKY 176
V + +++ W+Q + H + NH+L + +++
Sbjct: 522 FNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEH 559
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,737,476
Number of Sequences: 37866
Number of extensions: 1386991
Number of successful extensions: 3180
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3178
Number of HSP's gapped (non-prelim): 18
length of query: 854
length of database: 18,247,518
effective HSP length: 111
effective length of query: 743
effective length of database: 14,044,392
effective search space: 10434983256
effective search space used: 10434983256
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.