Search of human proteins with 148596959

Search of human proteins with 148596959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148596959 hypothetical protein LOC84293 [Homo sapiens]
         (229 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148596959 hypothetical protein LOC84293 [Homo sapiens]             460   e-130
gi|22748799 hypothetical protein LOC127281 [Homo sapiens]              77   2e-14
gi|63054819 hypothetical protein LOC195827 [Homo sapiens]              36   0.031
gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens]         29   2.9  
gi|196259776 peroxisomal biogenesis factor 5 isoform d [Homo sap...    29   3.8  
gi|196259774 peroxisomal biogenesis factor 5 isoform d [Homo sap...    29   3.8  
gi|196259772 peroxisomal biogenesis factor 5 isoform c [Homo sap...    29   3.8  
gi|21361204 peroxisomal biogenesis factor 5 isoform b [Homo sapi...    29   3.8  
gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]       28   6.5  
gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]       28   6.5  
gi|21361732 ring finger protein 121 [Homo sapiens]                     28   6.5  
gi|134152674 rabaptin, RAB GTPase binding effector protein 1 iso...    28   8.5  

>gi|148596959 hypothetical protein LOC84293 [Homo sapiens]
          Length = 229

 Score =  460 bits (1184), Expect = e-130
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 1   MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKE 60
           MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKE
Sbjct: 1   MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKE 60

Query: 61  PRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE 120
           PRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE
Sbjct: 61  PRTFKAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE 120

Query: 121 VKDFQPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFI 180
           VKDFQPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFI
Sbjct: 121 VKDFQPYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFI 180

Query: 181 LGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229
           LGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK
Sbjct: 181 LGGVFVVGSGKQGILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK 229


>gi|22748799 hypothetical protein LOC127281 [Homo sapiens]
          Length = 198

 Score = 76.6 bits (187), Expect = 2e-14
 Identities = 57/155 (36%), Positives = 79/155 (50%), Gaps = 8/155 (5%)

Query: 67  KELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQP 126
           + LW ++  V+  +RR GC +CR  A DLSSL  +LDQ GV L  V  E +  +      
Sbjct: 26  RSLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEALGLQEFLDGD 85

Query: 127 YFKGEIFLDEKKKFY---GPQRRKMMFMGFIRLG--VWYNFFRAWNGGFSGNLEGEGFIL 181
           YF GE++LDE K+ Y   G +R   + +    LG  V     +A   G  GNL G+    
Sbjct: 86  YFAGELYLDESKQLYKELGFKRYNSLSILPAALGKPVRDVAAKAKAVGIQGNLSGDLLQS 145

Query: 182 GGVFVVGSGKQGILLEHREKEFGD---KVNLLSVL 213
           GG+ VV  G   +LL   +K  GD   K ++L VL
Sbjct: 146 GGLLVVSKGGDKVLLHFVQKSPGDYVPKEHILQVL 180


>gi|63054819 hypothetical protein LOC195827 [Homo sapiens]
          Length = 226

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 26/207 (12%)

Query: 23  GAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMAVRR 82
           GAAAL    +  D    +P  AA+      +L  L+   +      L+ +  AV++ VR 
Sbjct: 13  GAAALVPAPSGPDS--GQPLAAAVA-----ELPVLDARGQRVPFGALFRERRAVVVFVRH 65

Query: 83  PGCFLCREEAADLSSL-KSMLDQLGVPLYAVVK---EHIRTEVKDFQPYFKGEIFLDEKK 138
             C++C+E   DL+ + +S L +  V L  + +    HI    K     +  EI++D ++
Sbjct: 66  FLCYICKEYVEDLAKIPRSFLQEANVTLIVIGQSSYHHIEPFCK--LTGYSHEIYVDPER 123

Query: 139 KFY---GPQRRKMM--------FMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILGGVFVV 187
           + Y   G +R + +            +  G   + +RA  G    + +G+    GG  ++
Sbjct: 124 EIYKRLGMKRGEEIASSGQSPHIKSNLLSGSLQSLWRAVTGPLF-DFQGDPAQQGGTLIL 182

Query: 188 GSGKQGILLEHREKEFGDKVNLLSVLE 214
           G G   I   HR++   D   + SVL+
Sbjct: 183 GPG-NNIHFIHRDRNRLDHKPINSVLQ 208


>gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens]
          Length = 2286

 Score = 29.3 bits (64), Expect = 2.9
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 20   GALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKELWEKNGAVIMA 79
            GAL +A   LLL      L  P K   E   + DLKT+ +  + F      E+ G  ++A
Sbjct: 1527 GALYSAEHGLLLEKVGPELLPPPKHTFEVRAETDLKTICRAIQRFLLAYKEERRGPTLIA 1586

Query: 80   VR 81
            V+
Sbjct: 1587 VQ 1588


>gi|196259776 peroxisomal biogenesis factor 5 isoform d [Homo
          sapiens]
          Length = 639

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 13 GMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKEL 69
          G W  GA A  AA+  L +A+ D  ++       E+L+D +   + + P+TFK  +L
Sbjct: 38 GPWPPGAPASEAASKPLGVASEDELVA-------EFLQDQNAPLVSRAPQTFKMDDL 87


>gi|196259774 peroxisomal biogenesis factor 5 isoform d [Homo
          sapiens]
          Length = 639

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 13 GMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKEL 69
          G W  GA A  AA+  L +A+ D  ++       E+L+D +   + + P+TFK  +L
Sbjct: 38 GPWPPGAPASEAASKPLGVASEDELVA-------EFLQDQNAPLVSRAPQTFKMDDL 87


>gi|196259772 peroxisomal biogenesis factor 5 isoform c [Homo
          sapiens]
          Length = 602

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 13 GMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKEL 69
          G W  GA A  AA+  L +A+ D  ++       E+L+D +   + + P+TFK  +L
Sbjct: 38 GPWPPGAPASEAASKPLGVASEDELVA-------EFLQDQNAPLVSRAPQTFKMDDL 87


>gi|21361204 peroxisomal biogenesis factor 5 isoform b [Homo
          sapiens]
          Length = 631

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 7/57 (12%)

Query: 13 GMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEPRTFKAKEL 69
          G W  GA A  AA+  L +A+ D  ++       E+L+D +   + + P+TFK  +L
Sbjct: 38 GPWPPGAPASEAASKPLGVASEDELVA-------EFLQDQNAPLVSRAPQTFKMDDL 87


>gi|116008194 myosin light chain kinase isoform 3A [Homo sapiens]
          Length = 1863

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 6    DPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEP-RTF 64
            +P  +   MWSIG        +  +L   D          ++  ++++ K L K+  + +
Sbjct: 1636 EPIGYATDMWSIGV-------ICYILNRLDCTQCLQHPWLMKDTKNMEAKKLSKDRMKKY 1688

Query: 65   KAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE 120
             A+  W+K G  + A+ R          A +S L       G P   +  E + +E
Sbjct: 1689 MARRKWQKTGNAVRAIGR------LSSMAMISGLSGRKSSTGSPTSPLNAEKLESE 1738


>gi|116008190 myosin light chain kinase isoform 3B [Homo sapiens]
          Length = 1794

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 24/116 (20%), Positives = 45/116 (38%), Gaps = 14/116 (12%)

Query: 6    DPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYLEDIDLKTLEKEP-RTF 64
            +P  +   MWSIG        +  +L   D          ++  ++++ K L K+  + +
Sbjct: 1567 EPIGYATDMWSIGV-------ICYILNRLDCTQCLQHPWLMKDTKNMEAKKLSKDRMKKY 1619

Query: 65   KAKELWEKNGAVIMAVRRPGCFLCREEAADLSSLKSMLDQLGVPLYAVVKEHIRTE 120
             A+  W+K G  + A+ R          A +S L       G P   +  E + +E
Sbjct: 1620 MARRKWQKTGNAVRAIGR------LSSMAMISGLSGRKSSTGSPTSPLNAEKLESE 1669


>gi|21361732 ring finger protein 121 [Homo sapiens]
          Length = 327

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 126 PYFKGEIFLDEKKKFYGPQRRKMMFMGFIRLGVWYNFFRAWNGGFSGNLEGEGFILG 182
           PY K ++  D K+ F  P  R  +  G  +L  W  +  AW     G ++G  +ILG
Sbjct: 273 PYCKEKV--DLKRMFSNPWERPHVMYG--QLLDWLRYLVAWQPVIIGVVQGINYILG 325


>gi|134152674 rabaptin, RAB GTPase binding effector protein 1
           isoform 2 [Homo sapiens]
          Length = 829

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 88  CREEAADLSSLKSMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK 137
           C+EE A +SSLK+ L+++ V       E +  E K+     + E+ + E+
Sbjct: 734 CKEEIASISSLKAELERIKVEKGQATVEQLMFEEKNKAQRLQTELDVSEQ 783


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,474,504
Number of Sequences: 37866
Number of extensions: 367765
Number of successful extensions: 795
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 789
Number of HSP's gapped (non-prelim): 13
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.