Search of human proteins with 148529000

Search of human proteins with 148529000

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|148529000 deleted in bladder cancer 1 [Homo sapiens]
         (761 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|148529000 deleted in bladder cancer 1 [Homo sapiens]              1570   0.0  
gi|39979638 family with sequence similarity 5, member C [Homo sa...   828   0.0  
gi|23943866 family with sequence similarity 5, member B [Homo sa...   806   0.0  
gi|45580688 complement component 7 precursor [Homo sapiens]            36   0.15 
gi|154275767 ADAMTS-like 1 isoform 4 precursor [Homo sapiens]          33   1.3  
gi|133908621 perforin 1 precursor [Homo sapiens]                       32   2.2  
gi|40254808 perforin 1 precursor [Homo sapiens]                        32   2.2  
gi|222446611 R-spondin family, member 2 [Homo sapiens]                 30   6.4  
gi|156104874 envoplakin [Homo sapiens]                                 30   6.4  
gi|4557391 complement component 8, beta polypeptide preproprotei...    30   8.4  
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]         30   8.4  
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]         30   8.4  
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]         30   8.4  

>gi|148529000 deleted in bladder cancer 1 [Homo sapiens]
          Length = 761

 Score = 1570 bits (4064), Expect = 0.0
 Identities = 761/761 (100%), Positives = 761/761 (100%)

Query: 1   MNWRFVELLYFLFIWGRISVQPSHQEPAGTDQHVSKEFDWLISDRGPFHHSRSYLSFVER 60
           MNWRFVELLYFLFIWGRISVQPSHQEPAGTDQHVSKEFDWLISDRGPFHHSRSYLSFVER
Sbjct: 1   MNWRFVELLYFLFIWGRISVQPSHQEPAGTDQHVSKEFDWLISDRGPFHHSRSYLSFVER 60

Query: 61  HRQGFTTRYKIYREFARWKVRNTAIERRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDT 120
           HRQGFTTRYKIYREFARWKVRNTAIERRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDT
Sbjct: 61  HRQGFTTRYKIYREFARWKVRNTAIERRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDT 120

Query: 121 IIKKYGTHLLISATLGGEEALTMYMDKSRLDRKSGNATQSVEALHQLASSYFVDRDGTMR 180
           IIKKYGTHLLISATLGGEEALTMYMDKSRLDRKSGNATQSVEALHQLASSYFVDRDGTMR
Sbjct: 121 IIKKYGTHLLISATLGGEEALTMYMDKSRLDRKSGNATQSVEALHQLASSYFVDRDGTMR 180

Query: 181 RLHEIQISTGAIKVTETRTGPLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQE 240
           RLHEIQISTGAIKVTETRTGPLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQE
Sbjct: 181 RLHEIQISTGAIKVTETRTGPLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQE 240

Query: 241 KFVQSALSYIMCNGEGEYLCQNSQCRCQCAEEFPQCNCPITDIQIMEYTLANMAKSWAEA 300
           KFVQSALSYIMCNGEGEYLCQNSQCRCQCAEEFPQCNCPITDIQIMEYTLANMAKSWAEA
Sbjct: 241 KFVQSALSYIMCNGEGEYLCQNSQCRCQCAEEFPQCNCPITDIQIMEYTLANMAKSWAEA 300

Query: 301 YKDLENSDEFKSFMKRLPSNHFLTIGSIHQHWGNDWDLQNRYKLLQSATEAQRQKIQRTA 360
           YKDLENSDEFKSFMKRLPSNHFLTIGSIHQHWGNDWDLQNRYKLLQSATEAQRQKIQRTA
Sbjct: 301 YKDLENSDEFKSFMKRLPSNHFLTIGSIHQHWGNDWDLQNRYKLLQSATEAQRQKIQRTA 360

Query: 361 RKLFGLSVRCRHNPNHQLPRERTIQQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTT 420
           RKLFGLSVRCRHNPNHQLPRERTIQQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTT
Sbjct: 361 RKLFGLSVRCRHNPNHQLPRERTIQQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTT 420

Query: 421 LCQRPIPCVIGGNNSCAMCSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQFISFETD 480
           LCQRPIPCVIGGNNSCAMCSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQFISFETD
Sbjct: 421 LCQRPIPCVIGGNNSCAMCSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQFISFETD 480

Query: 481 LDFQDLELKYLLQKMDSRLYVHTTFISNEIRLDTFFDPRWRKRMSLTLKSNKNRMDFIHM 540
           LDFQDLELKYLLQKMDSRLYVHTTFISNEIRLDTFFDPRWRKRMSLTLKSNKNRMDFIHM
Sbjct: 481 LDFQDLELKYLLQKMDSRLYVHTTFISNEIRLDTFFDPRWRKRMSLTLKSNKNRMDFIHM 540

Query: 541 VIGMSMRICQMRNSSLDPMFFVYVNPFSGSHSEGWNMPFGEFGYPRWEKIRLQNSQCYNW 600
           VIGMSMRICQMRNSSLDPMFFVYVNPFSGSHSEGWNMPFGEFGYPRWEKIRLQNSQCYNW
Sbjct: 541 VIGMSMRICQMRNSSLDPMFFVYVNPFSGSHSEGWNMPFGEFGYPRWEKIRLQNSQCYNW 600

Query: 601 TLLLGNRWKTFFETVHIYLRSRTRLPTLLRNETGQGPVDLSDPSKRQFYIKISDVQVFGY 660
           TLLLGNRWKTFFETVHIYLRSRTRLPTLLRNETGQGPVDLSDPSKRQFYIKISDVQVFGY
Sbjct: 601 TLLLGNRWKTFFETVHIYLRSRTRLPTLLRNETGQGPVDLSDPSKRQFYIKISDVQVFGY 660

Query: 661 SLRFNADLLRSAVQQVNQSYTQGGQFYSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLF 720
           SLRFNADLLRSAVQQVNQSYTQGGQFYSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLF
Sbjct: 661 SLRFNADLLRSAVQQVNQSYTQGGQFYSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLF 720

Query: 721 SCMLKHRLKLTNSEIIRVNHALDLYNTEILKQSDQMTAKLC 761
           SCMLKHRLKLTNSEIIRVNHALDLYNTEILKQSDQMTAKLC
Sbjct: 721 SCMLKHRLKLTNSEIIRVNHALDLYNTEILKQSDQMTAKLC 761


>gi|39979638 family with sequence similarity 5, member C [Homo
           sapiens]
          Length = 766

 Score =  828 bits (2139), Expect = 0.0
 Identities = 397/743 (53%), Positives = 529/743 (71%), Gaps = 20/743 (2%)

Query: 28  AGTDQHVSKEFDWLISDRGPFHHSRSYLSFVERHRQGFTTRYKIYREFARWKVRNTAIER 87
           A +DQH +  FDWL+SD+GPFH S+ Y  FV+R RQGF+TRYKIYREF RWKV N A+ER
Sbjct: 34  AVSDQHATSPFDWLLSDKGPFHRSQEYTDFVDRSRQGFSTRYKIYREFGRWKVNNLAVER 93

Query: 88  RDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDTIIKKYGTHLLISATLGGEEALTMYMDK 147
           R+ +  P+PL PEF R+IRLLGRRPT QQ  + +IKKYGTH L+SATLGGEE+LT+++DK
Sbjct: 94  RNFLGSPLPLAPEFFRNIRLLGRRPTLQQITENLIKKYGTHFLLSATLGGEESLTIFVDK 153

Query: 148 SRLDRKS-------GNATQSVEALHQLASSYFVDRDGTMRRLHEIQISTGAIKVTETRTG 200
            +L +++        +++ ++E LHQLA+SYF+DRD T+RRLH IQI++ AIKVTETRTG
Sbjct: 154 RKLSKRAEGSDSTTNSSSVTLETLHQLAASYFIDRDSTLRRLHHIQIASTAIKVTETRTG 213

Query: 201 PLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQEKFVQSALSYIMCNGEGEYLC 260
           PLGC++YDNLDSVSSVL+QS E+K+ LQGLQ++ P YLQE+FVQ+ALSYI CN EGE++C
Sbjct: 214 PLGCSNYDNLDSVSSVLVQSPENKIQLQGLQVLLPDYLQERFVQAALSYIACNSEGEFIC 273

Query: 261 QNSQCRCQCAEEFPQCNCPITDIQIMEYTLANMAKSWAEAYKDLENSDEFKSFMKRLPSN 320
           + + C C C  +FP+CNCP  DIQ ME  L  + ++W     D E SDEFK FMKRLP N
Sbjct: 274 KENDCWCHCGPKFPECNCPSMDIQAMEENLLRITETWKAYNSDFEESDEFKLFMKRLPMN 333

Query: 321 HFLTIGSIHQHWGNDWDLQNRYKLLQSATEAQRQKIQRTARKLFGLSVRCRHNPNHQLPR 380
           +FL   +I   W  D + Q RY+ L+++ +    K Q+   KLF LS RC   P   LPR
Sbjct: 334 YFLNTSTIMHLWTMDSNFQRRYEQLENSMKQLFLKAQKIVHKLFSLSKRCHKQPLISLPR 393

Query: 381 ERTIQQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTTLCQRPIPCVIGGNNSCAMCS 440
           +RT   WL R+QS LYCNENG  G+F E   SC C     +C   +PC +G  ++C  C+
Sbjct: 394 QRTSTYWLTRIQSFLYCNENGLLGSFSEETHSCTCPNDQVVCTAFLPCTVGDASACLTCA 453

Query: 441 LANISLCGSCNKGYKLYRGRCEPQNVDSERSEQFISFETDLDFQDLELKYLLQKMDSRLY 500
             N + CG+CN GY L +G C+P+  +S  ++ +I FETDL  QDLE+KYLLQK D R+ 
Sbjct: 454 PDNRTRCGTCNTGYMLSQGLCKPEVAES--TDHYIGFETDL--QDLEMKYLLQKTDRRIE 509

Query: 501 VHTTFISNEIRLDTFFDPRWRKRMSLTLKSNKNRMDFIHMVIGMSMRICQMRNSSLDPMF 560
           VH  FISN++RL+++FDP WRKRM LTLKSNK +   +HM++G+S++IC  +NS+L+P+ 
Sbjct: 510 VHAIFISNDMRLNSWFDPSWRKRMLLTLKSNKYKSSLVHMILGLSLQICLTKNSTLEPVL 569

Query: 561 FVYVNPFSGSHSEGWNMPFGEFGYPRWEKIRLQ-NSQCYNWTLLLGNRWKTFFETVHIYL 619
            VYVNPF GSHSE W MP  E  +P WE+ +L    QCYNWTL LGN+WKTFFETVHIYL
Sbjct: 570 AVYVNPFGGSHSESWFMPVNENSFPDWERTKLDLPLQCYNWTLTLGNKWKTFFETVHIYL 629

Query: 620 RSRTRLPTLLRNET-GQGPVDLSDPSKRQFYIKISDVQVFGYSLRFNADLLRSAVQQVNQ 678
           RSR +      NE+    P++  DPS+   Y+KI+++QVFGYS+ F+ + +R  + Q++ 
Sbjct: 630 RSRIKSNGPNGNESIYYEPLEFIDPSRNLGYMKINNIQVFGYSMHFDPEAIRDLILQLDY 689

Query: 679 SYTQGGQFYSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLTNSEIIRV 738
            YTQG Q     S +L LL+IRDR+N+L+P   PG+ +LDLFSC+L+HRLKL+ SE++R+
Sbjct: 690 PYTQGSQ----DSALLQLLEIRDRVNKLSP---PGQRRLDLFSCLLRHRLKLSTSEVVRI 742

Query: 739 NHALDLYNTEILKQSDQMTAKLC 761
             AL  +N ++    D  T KLC
Sbjct: 743 QSALQAFNAKLPNTMDYDTTKLC 765


>gi|23943866 family with sequence similarity 5, member B [Homo
           sapiens]
          Length = 783

 Score =  806 bits (2082), Expect = 0.0
 Identities = 396/750 (52%), Positives = 528/750 (70%), Gaps = 30/750 (4%)

Query: 31  DQHVS----KEFDWLISDRGPFHHSRSYLSFVERHRQGFTTRYKIYREFARWKVRNTAIE 86
           +QH S       DWL++DRGPFH ++ Y  F+ER+RQGFTTRY+IYREFARWKV N A+E
Sbjct: 44  EQHASVAGQHPLDWLLTDRGPFHRAQEYADFMERYRQGFTTRYRIYREFARWKVNNLALE 103

Query: 87  RRDLVRHPVPLMPEFQRSIRLLGRRPTTQQFIDTIIKKYGTHLLISATLGGEEALTMYMD 146
           R+D    P+PL PEF R+IRLLGRRP  QQ  + +IKKYGTH L+SATLGGEE+LT+++D
Sbjct: 104 RKDFFSLPLPLAPEFIRNIRLLGRRPNLQQVTENLIKKYGTHFLLSATLGGEESLTIFVD 163

Query: 147 KSRLDRK------------SGNATQ-SVEALHQLASSYFVDRDGTMRRLHEIQISTGAIK 193
           K +L RK            SGN+T  S+E LHQLA+SYF+DR+ T+RRLH IQI+TGAIK
Sbjct: 164 KQKLGRKTETTGGASIIGGSGNSTAVSLETLHQLAASYFIDRESTLRRLHHIQIATGAIK 223

Query: 194 VTETRTGPLGCNSYDNLDSVSSVLLQSTESKLHLQGLQIIFPQYLQEKFVQSALSYIMCN 253
           VTETRTGPLGC++YDNLDSVSSVL+QS E+K+ L GLQ++ P+YL+E+FV +ALSYI C+
Sbjct: 224 VTETRTGPLGCSNYDNLDSVSSVLVQSPENKVQLLGLQVLLPEYLRERFVAAALSYITCS 283

Query: 254 GEGEYLCQNSQCRCQCAEEFPQCNCPITDIQIMEYTLANMAKSWAEAYKDLENSDEFKSF 313
            EGE +C+ + C C+C+  FP+CNCP  DIQ ME +L  +  SWA   +  E S+EF++ 
Sbjct: 284 SEGELVCKENDCWCKCSPTFPECNCPDADIQAMEDSLLQIQDSWATHNRQFEESEEFQAL 343

Query: 314 MKRLPSNHFLTIGSIHQHWGNDWDLQNRYKLLQSATEAQRQKIQRTARKLFGLSVRCRHN 373
           +KRLP + FL   +I Q W  D  LQ+RY+ L +  +   +K  R  R+LF L  RC   
Sbjct: 344 LKRLPDDRFLNSTAISQFWAMDTSLQHRYQQLGAGLKVLFKKTHRILRRLFNLCKRCHRQ 403

Query: 374 PNHQLPRERTIQQWLARVQSLLYCNENGFWGTFLESQRSCVCHGSTTLCQRPIPCVIGGN 433
           P  +LP+ER++  W  R+QSLLYC E+ F GTFLE   SC C    + CQ PIPC +G  
Sbjct: 404 PRFRLPKERSLSYWWNRIQSLLYCGESTFPGTFLEQSHSCTCPYDQSSCQGPIPCALGEG 463

Query: 434 NSCAMCSLANISLCGSCNKGYKLYRGRCEPQNVDSERSEQFISFETDLDFQDLELKYLLQ 493
            +CA C+  N + CGSCN GY L +G C P+  +S   E F+  ETDL  QDLELKYLLQ
Sbjct: 464 PACAHCAPDNSTRCGSCNPGYVLAQGLCRPEVAES--LENFLGLETDL--QDLELKYLLQ 519

Query: 494 KMDSRLYVHTTFISNEIRLDTFFDPRWRKRMSLTLKSNKNRMDFIHMVIGMSMRICQMRN 553
           K DSR+ VH+ FISN++RL ++FDP WRKRM LTLKSNK +   +H+++ +S++IC  +N
Sbjct: 520 KQDSRIEVHSIFISNDMRLGSWFDPSWRKRMLLTLKSNKYKPGLVHVMLALSLQICLTKN 579

Query: 554 SSLDPMFFVYVNPFSGSHSEGWNMPFGEFGYPRWEKIRLQ-NSQCYNWTLLLGNRWKTFF 612
           S+L+P+  +YVNPF GSHSE W MP  E  +P WE+  +   +QC NWT+ LGNRWKTFF
Sbjct: 580 STLEPVMAIYVNPFGGSHSESWFMPVNEGSFPDWERTNVDAAAQCQNWTITLGNRWKTFF 639

Query: 613 ETVHIYLRSRTRLPTLLRNET-GQGPVDLSDPSKRQFYIKISDVQVFGYSLRFNADLLRS 671
           ETVH+YLRSR +      NET    P++++DPSK   Y+KI+ +QVFGYSL F+ D +R 
Sbjct: 640 ETVHVYLRSRIKSLDDSSNETIYYEPLEMTDPSKNLGYMKINTLQVFGYSLPFDPDAIRD 699

Query: 672 AVQQVNQSYTQGGQFYSSSSVMLLLLDIRDRINRLAPPVAPGKPQLDLFSCMLKHRLKLT 731
            + Q++  YTQG Q     S +L L+++RDR+N+L+P   PGK +LDLFSC+L+HRLKL 
Sbjct: 700 LILQLDYPYTQGSQ----DSALLQLIELRDRVNQLSP---PGKVRLDLFSCLLRHRLKLA 752

Query: 732 NSEIIRVNHALDLYNTEILKQSDQMTAKLC 761
           N+E+ R+  +L  +N+++    +  T KLC
Sbjct: 753 NNEVGRIQSSLRAFNSKLPNPVEYETGKLC 782


>gi|45580688 complement component 7 precursor [Homo sapiens]
          Length = 843

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 121 IIKKYGTHLLISATLGGEEALTMYMDKSRLDRKSGNATQ 159
           +I +YGTH L S +LGGE  +  Y+D  +L +   N+ +
Sbjct: 295 LIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNDFNSVE 333


>gi|154275767 ADAMTS-like 1 isoform 4 precursor [Homo sapiens]
          Length = 1762

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 5/91 (5%)

Query: 136  GGEEAL-----TMYMDKSRLDRKSGNATQSVEALHQLASSYFVDRDGTMRRLHEIQISTG 190
            G E+ L     TM  ++ RLD   GN +Q  E L  L S + V +         ++    
Sbjct: 1059 GAEQVLLHLPFTMVTEQRRLDDILGNLSQQPEELRDLYSKHLVAQLAQEIFRSHLEHQDT 1118

Query: 191  AIKVTETRTGPLGCNSYDNLDSVSSVLLQST 221
             +K +E RT P+  + + ++   SS L  S+
Sbjct: 1119 LLKPSERRTSPVTLSPHKHVSGFSSSLRTSS 1149


>gi|133908621 perforin 1 precursor [Homo sapiens]
          Length = 555

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 91  VRHPVPLMPEFQRSIRLLGRR--PTTQQFIDTIIKKYGTHLLISATLGGE-EALT 142
           V H  PL P+F+R++  L      +TQ     +I  YGTH + +  LGG   ALT
Sbjct: 183 VVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALT 237


>gi|40254808 perforin 1 precursor [Homo sapiens]
          Length = 555

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 91  VRHPVPLMPEFQRSIRLLGRR--PTTQQFIDTIIKKYGTHLLISATLGGE-EALT 142
           V H  PL P+F+R++  L      +TQ     +I  YGTH + +  LGG   ALT
Sbjct: 183 VVHTPPLHPDFKRALGDLPHHFNASTQPAYLRLISNYGTHFIRAVELGGRISALT 237


>gi|222446611 R-spondin family, member 2 [Homo sapiens]
          Length = 243

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)

Query: 434 NSCAMCSLANISLCGS------CNKGYKLYRGRC 461
           N CA C + N   C S      C  G+ L+RGRC
Sbjct: 91  NRCARCRIENCDSCFSKDFCTKCKVGFYLHRGRC 124


>gi|156104874 envoplakin [Homo sapiens]
          Length = 2033

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 338  LQNRYKLLQSATEAQRQKIQRTARKLFGLSVRCRHNPNHQLPRERTIQQWLARV 391
            LQ   KLL   TE++RQK  +  ++L  L        +    +ERT++   A+V
Sbjct: 1613 LQEESKLLSQKTESERQKAAQRGQELSRLEAAILREKDQIYEKERTLRDLHAKV 1666


>gi|4557391 complement component 8, beta polypeptide preproprotein
           [Homo sapiens]
          Length = 591

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 14/110 (12%)

Query: 43  SDRGPFHHSRSYLSFVERHRQGFTTRYKIYREFARWKVRNTAIERRDLVRHPVPLMPEFQ 102
           SDRG  H+ R    F   H +      +   E A +K++      R L+ H      EF 
Sbjct: 272 SDRGK-HYIRRTKRF--SHTKSVFLHARSDLEVAHYKLKP-----RSLMLHY-----EFL 318

Query: 103 RSIRLLGRRPTTQQFIDTIIKKYGTHLLISATLGGEEALTMYMDKSRLDR 152
           + ++ L    +  ++ D + + +GTH +  A LGG    T+ M+K  ++R
Sbjct: 319 QRVKRLPLEYSYGEYRD-LFRDFGTHYITEAVLGGIYEYTLVMNKEAMER 367


>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
          Length = 1805

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 248 SYIMCNGEGEYLCQNSQCRCQCAEEFPQCNCPITD 282
           S  +CN  G   C   QC C+     P C+CP+++
Sbjct: 547 SGFLCNDRGR--CSMGQCVCEPGWTGPSCDCPLSN 579


>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
          Length = 1822

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 248 SYIMCNGEGEYLCQNSQCRCQCAEEFPQCNCPITD 282
           S  +CN  G   C   QC C+     P C+CP+++
Sbjct: 547 SGFLCNDRGR--CSMGQCVCEPGWTGPSCDCPLSN 579


>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
          Length = 1752

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 248 SYIMCNGEGEYLCQNSQCRCQCAEEFPQCNCPITD 282
           S  +CN  G   C   QC C+     P C+CP+++
Sbjct: 547 SGFLCNDRGR--CSMGQCVCEPGWTGPSCDCPLSN 579


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,454,080
Number of Sequences: 37866
Number of extensions: 1260438
Number of successful extensions: 3085
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3063
Number of HSP's gapped (non-prelim): 17
length of query: 761
length of database: 18,247,518
effective HSP length: 110
effective length of query: 651
effective length of database: 14,082,258
effective search space: 9167549958
effective search space used: 9167549958
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.