Search of human proteins with 14719428

Search of human proteins with 14719428

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14719428 thymic stromal lymphopoietin isoform 1 [Homo
sapiens]
         (159 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14719428 thymic stromal lymphopoietin isoform 1 [Homo sapiens]     321   1e-88
gi|190886449 thymic stromal lymphopoietin isoform 2 [Homo sapiens]    131   2e-31
gi|153791662 coiled-coil domain containing 71 [Homo sapiens]           30   0.67 
gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo sa...    30   0.87 
gi|4502105 annexin IV [Homo sapiens]                                   29   1.5  
gi|31377566 ring finger protein 168 [Homo sapiens]                     28   4.3  
gi|22749539 hypothetical protein LOC257169 [Homo sapiens]              28   4.3  
gi|110835708 solute carrier family 5 (inositol transporters), me...    27   7.4  
gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F...    27   9.6  

>gi|14719428 thymic stromal lymphopoietin isoform 1 [Homo sapiens]
          Length = 159

 Score =  321 bits (823), Expect = 1e-88
 Identities = 159/159 (100%), Positives = 159/159 (100%)

Query: 1   MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS 60
           MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS
Sbjct: 1   MFPFALLYVLSVSFRKIFILQLVGLVLTYDFTNCDFEKIKAAYLSTISKDLITYMSGTKS 60

Query: 61  TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA 120
           TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA
Sbjct: 61  TEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMFAMKTKAALAIWCPGYSETQINA 120

Query: 121 TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ 159
           TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ
Sbjct: 121 TQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLLKQQ 159


>gi|190886449 thymic stromal lymphopoietin isoform 2 [Homo sapiens]
          Length = 63

 Score =  131 bits (330), Expect = 2e-31
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 97  MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 156
           MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL
Sbjct: 1   MFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRRFNRPLL 60

Query: 157 KQQ 159
           KQQ
Sbjct: 61  KQQ 63


>gi|153791662 coiled-coil domain containing 71 [Homo sapiens]
          Length = 467

 Score = 30.4 bits (67), Expect = 0.67
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 44  LSTISKDLITYMSGTKSTEFNNTV----------SCSNRPHCLTEIQSLTFNPTAGCASL 93
           LS     L+ ++ G +   F  T+          SC+  P   T++Q+   NPTA     
Sbjct: 41  LSATEAQLVAFLQGLRDDGFQPTILRSGDVYGYSSCTANPPSQTKLQARAPNPTATSPPA 100

Query: 94  AKEMFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQ 143
           +    AM+  A  A   P     ++   +A      +  TTN  L  + Q
Sbjct: 101 SAPRTAMRLPAGRATLLPMPLSGRL--AKASTPALAKHATTNLLLSSLKQ 148


>gi|21361912 DnaJ (Hsp40) homolog, subfamily C, member 1 [Homo
           sapiens]
          Length = 554

 Score = 30.0 bits (66), Expect = 0.87
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 91  ASLAKEMFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQLQGLWRR 150
           A LA  +F + T    A+    Y E Q++   + KKR K+K T +K ++ VS+L G   +
Sbjct: 152 AELALLLFIILTVGHYAVVWSIYLEKQLDELLSRKKREKKKKTGSKSVD-VSKL-GASEK 209

Query: 151 FNRPLLKQQ 159
             R L+K Q
Sbjct: 210 NERLLMKPQ 218


>gi|4502105 annexin IV [Homo sapiens]
          Length = 321

 Score = 29.3 bits (64), Expect = 1.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)

Query: 37 EKIKAAYLSTISKDLITYMSGTKSTEFNNTVSCSNRPHCLTEIQSL 82
          ++I+ AY STI +DLI  +    S  F   +     P  L ++Q L
Sbjct: 52 QEIRTAYKSTIGRDLIDDLKSELSGNFEQVIVGMMTPTVLYDVQEL 97


>gi|31377566 ring finger protein 168 [Homo sapiens]
          Length = 571

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 2/71 (2%)

Query: 56  SGTKSTEFNNTVSCSNRPHCLTEIQSLT--FNPTAGCASLAKEMFAMKTKAALAIWCPGY 113
           SG   T  NNT    N   CL   + ++   N  +   ++    F+ K +       P  
Sbjct: 359 SGVTQTNGNNTGETENEESCLLISKEISKRKNQESSFEAVKDPCFSAKRRKVSPESSPDQ 418

Query: 114 SETQINATQAM 124
            ET+IN TQ +
Sbjct: 419 EETEINFTQKL 429


>gi|22749539 hypothetical protein LOC257169 [Homo sapiens]
          Length = 461

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 14/89 (15%)

Query: 67  VSCSNRPHCLTEIQSLTFNPTA-GCASLAKEMFAMKTKAALAIWCPGYSETQINATQAMK 125
           ++C+NR   L +   L  N T   C    + M        + +W P   ET+I+ +Q  K
Sbjct: 107 INCTNR---LPKFPVLNLNETQLPCPEDVRNM--------VVLWIP--EETEIHVSQHGK 153

Query: 126 KRRKRKVTTNKCLEQVSQLQGLWRRFNRP 154
           K+RK     +K    +S  Q    R   P
Sbjct: 154 KKRKNSAVKSKSFLGLSGNQSAGTRVGTP 182


>gi|110835708 solute carrier family 5 (inositol transporters),
           member 3 [Homo sapiens]
          Length = 718

 Score = 26.9 bits (58), Expect = 7.4
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 39  IKAAYLSTISKDLITYMSGTKSTEFNNTVSCSNRPHCLTEIQSLTFNPTAGCASLAKEMF 98
           + A +L  +   +I          F + ++C N  HC+     L     AGC+++A    
Sbjct: 300 LMAGFLKLLPMFIIVVPGMISRILFTDDIACINPEHCM-----LVCGSRAGCSNIAYPRL 354

Query: 99  AMK 101
            MK
Sbjct: 355 VMK 357


>gi|53832007 calcium channel, voltage-dependent, L type, alpha 1F
            subunit [Homo sapiens]
          Length = 1977

 Score = 26.6 bits (57), Expect = 9.6
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 86   PTAGCASLAKEMFAMKTKAALAIWCPGYSETQINATQAMKKRRKRKVTTNKCLEQVSQ-- 143
            P  G   L     A K   A+ +          NAT     R   K+ T   LEQ +Q  
Sbjct: 1491 PPLGFGKLCPHRVACKRLVAMNMPLNSDGTVTFNATLFALVRTSLKIKTEGNLEQANQEL 1550

Query: 144  ---LQGLWRRFNRPLLKQ 158
               ++ +W+R  + LL +
Sbjct: 1551 RIVIKKIWKRMKQKLLDE 1568


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,118,964
Number of Sequences: 37866
Number of extensions: 175160
Number of successful extensions: 641
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 9
length of query: 159
length of database: 18,247,518
effective HSP length: 94
effective length of query: 65
effective length of database: 14,688,114
effective search space: 954727410
effective search space used: 954727410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.