Guide to the Human Genome
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Name: TSLP Sequence: fasta or formatted (159aa) NCBI GI: 14719428
Description:

thymic stromal lymphopoietin isoform 1

Referenced in:

Hematopoiesis and Erythrocytes
Non-Receptor Tyrosine Kinase Pathways

Other entries for this name:
alt prot [63aa] thymic stromal lymphopoietin isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         12           2
 C cysteine            3.8          6           1
 D aspartate           1.9          3           1
 E glutamate           3.8          6           1
 F phenylalanine       6.3         10           1
 G glycine             3.1          5           1
 H histidine           0.6          1           1
 I isoleucine          5.0          8           1
 K lysine              8.8         14           2
 L leucine            11.3         18           2
 M methionine          3.1          5           1
 N asparagine          5.0          8           2
 P proline             3.1          5           1
 Q glutamine           5.7          9           2
 R arginine            5.0          8           2
 S serine              7.5         12           1
 T threonine           9.4         15           2
 V valine              4.4          7           1
 W tryptophan          1.3          2           1
 Y tyrosine            3.1          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   thymic stromal lymphopoietin isoform 1 
TSLP                  0.358   thymic stromal lymphopoietin isoform 2 
CCDC71                0.017   coiled-coil domain containing 71 
DNAJC1                0.017   DnaJ (Hsp40) homolog, subfamily C, member 1 
ANXA4                 0.014   annexin IV 
RNF168                0.010   ring finger protein 168 
C9orf43               0.010   hypothetical protein LOC257169 
SLC5A3                0.007   solute carrier family 5 (inositol transporters), me...
CACNA1F               0.007   calcium channel, voltage-dependent, L type, alpha 1F...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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