Search of human proteins with 109698599

Search of human proteins with 109698599

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|109698599 trafficking protein particle complex 5 [Homo
sapiens]
         (188 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|109698599 trafficking protein particle complex 5 [Homo sapiens]    363   e-101
gi|109698597 trafficking protein particle complex 5 [Homo sapiens]    363   e-101
gi|109698595 trafficking protein particle complex 5 [Homo sapiens]    363   e-101
gi|109637795 E2F transcription factor 6 [Homo sapiens]                 30   1.2  
gi|161377433 methyltransferase like 8 [Homo sapiens]                   30   1.6  
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]                28   3.6  
gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]            28   4.7  
gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]            28   4.7  
gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]            28   4.7  
gi|52486265 paraneoplastic antigen MA1 [Homo sapiens]                  28   4.7  
gi|30240932 EH-domain containing 1 [Homo sapiens]                      28   6.1  

>gi|109698599 trafficking protein particle complex 5 [Homo sapiens]
          Length = 188

 Score =  363 bits (932), Expect = e-101
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ 60
           MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ
Sbjct: 1   MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ 60

Query: 61  VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER 120
           VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER
Sbjct: 61  VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER 120

Query: 121 EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA 180
           EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA
Sbjct: 121 EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA 180

Query: 181 RDRALEGR 188
           RDRALEGR
Sbjct: 181 RDRALEGR 188


>gi|109698597 trafficking protein particle complex 5 [Homo sapiens]
          Length = 188

 Score =  363 bits (932), Expect = e-101
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ 60
           MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ
Sbjct: 1   MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ 60

Query: 61  VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER 120
           VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER
Sbjct: 61  VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER 120

Query: 121 EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA 180
           EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA
Sbjct: 121 EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA 180

Query: 181 RDRALEGR 188
           RDRALEGR
Sbjct: 181 RDRALEGR 188


>gi|109698595 trafficking protein particle complex 5 [Homo sapiens]
          Length = 188

 Score =  363 bits (932), Expect = e-101
 Identities = 188/188 (100%), Positives = 188/188 (100%)

Query: 1   MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ 60
           MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ
Sbjct: 1   MEARFTRGKSALLERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQ 60

Query: 61  VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER 120
           VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER
Sbjct: 61  VGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTFYIIER 120

Query: 121 EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA 180
           EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA
Sbjct: 121 EPLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTTLMIKFEEAVIA 180

Query: 181 RDRALEGR 188
           RDRALEGR
Sbjct: 181 RDRALEGR 188


>gi|109637795 E2F transcription factor 6 [Homo sapiens]
          Length = 281

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 19  RPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVG--ARVLDALVAREKGA 76
           RPR +VSL      F +LV+     +  + ++ ++L    R+V     VLD +   EK +
Sbjct: 61  RPRFDVSLVYLTRKFMDLVRSAPGGILDLNKVATKLGVRKRRVYDITNVLDGIDLVEKKS 120

Query: 77  RRETKVLGALLFVKGAV 93
           +   + +G+ L   GAV
Sbjct: 121 KNHIRWIGSDLSNFGAV 137


>gi|161377433 methyltransferase like 8 [Homo sapiens]
          Length = 407

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 122 PLINTYISVPKENSTLNCASFTAGIVEAVLTHSGFPA 158
           P++NT  + P+  S L C  F +G VE V +HS + A
Sbjct: 213 PILNTLENSPE--SFLYCCDFASGAVELVKSHSSYRA 247


>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
          Length = 2017

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 13  LERALARPRTEVSLSAFALLFSELVQHCQSRVFSVAELQSRLAALGRQVGARVLDALVAR 72
           LE+ +AR   E SL         L Q   +     ++LQ +LA L RQ+  R  +   AR
Sbjct: 795 LEQEVARQGLEGSLRVAEQAQEALEQQLPTLRHERSQLQEQLAQLSRQLSGREQELEQAR 854

Query: 73  EKGARRETKVLGALLFVKGAVWKALFGKEADKLEQANDDARTF------YIIEREPLINT 126
            + A+R+ + L      K A+ K   G  A +L  A  + RT         +E+E L  +
Sbjct: 855 RE-AQRQVEALERAAREKEALAKEHAGL-AVQLVAAEREGRTLSEEATRLRLEKEALEGS 912

Query: 127 YISVPKENSTL 137
              V ++ + L
Sbjct: 913 LFEVQRQLAQL 923


>gi|169166639 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTT 169
           +S P+  S+     F  G  EA+L HSGFP +    W  G T
Sbjct: 84  VSAPRGASSFLSPRFRPGWGEALLHHSGFPER---GWPAGET 122


>gi|113416043 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTT 169
           +S P+  S+     F  G  EA+L HSGFP +    W  G T
Sbjct: 84  VSAPRGASSFLSPRFRPGWGEALLHHSGFPER---GWPAGET 122


>gi|113415531 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 128 ISVPKENSTLNCASFTAGIVEAVLTHSGFPAKVTAHWHKGTT 169
           +S P+  S+     F  G  EA+L HSGFP +    W  G T
Sbjct: 84  VSAPRGASSFLSPRFRPGWGEALLHHSGFPER---GWPAGET 122


>gi|52486265 paraneoplastic antigen MA1 [Homo sapiens]
          Length = 353

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 48 AELQSRLAALGRQVGARVLDALVAREKGARRE-TKVLGALLFV--------KGAVWKALF 98
          AE++  L A   QV  R+L  +  RE+ A+    ++ GA+ +         KG VWK LF
Sbjct: 33 AEIEETLQAAMPQVSYRMLGRMFWREENAKAALLELTGAVDYAAIPREMPGKGGVWKVLF 92


>gi|30240932 EH-domain containing 1 [Homo sapiens]
          Length = 534

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 49  ELQSRLAALGRQVGARVLDALVAREKGARRETKVLGALLFVKGAVWKALFGKEADKLEQA 108
           +L   + +L R    R L+ L+ R + A+    ++ +L      V    FGKE+ K E  
Sbjct: 277 DLFKDIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPNV----FGKESKKKELV 332

Query: 109 NDDARTFYIIEREPLIN 125
           N+    +  IERE  I+
Sbjct: 333 NNLGEIYQKIEREHQIS 349


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,508,578
Number of Sequences: 37866
Number of extensions: 198141
Number of successful extensions: 514
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 507
Number of HSP's gapped (non-prelim): 11
length of query: 188
length of database: 18,247,518
effective HSP length: 96
effective length of query: 92
effective length of database: 14,612,382
effective search space: 1344339144
effective search space used: 1344339144
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.