Search of human proteins with 96304457

Search of human proteins with 96304457

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|96304457 acid phosphatase 1, soluble isoform d [Homo
sapiens]
         (112 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]      231   7e-62
gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]       163   2e-41
gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]       122   8e-29
gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble [...    47   3e-06
gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo ...    47   3e-06
gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo ...    47   3e-06
gi|12383082 DNA cross-link repair 1B (PSO2 homolog, S. cerevisia...    30   0.54 
gi|5031877 lamin B1 [Homo sapiens]                                     27   4.6  
gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding p...    27   4.6  
gi|38348211 golgi transport 1 homolog A [Homo sapiens]                 26   6.0  
gi|112363080 microtubule associated serine/threonine kinase 2 [H...    26   7.8  
gi|4506455 reticulocalbin 1 precursor [Homo sapiens]                   26   7.8  

>gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]
          Length = 112

 Score =  231 bits (590), Expect = 7e-62
 Identities = 112/112 (100%), Positives = 112/112 (100%)

Query: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
           MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
Sbjct: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60

Query: 61  QSCMKRHGIPMSHVARQVPSLDLKLCVLCFSGSLTAVLFLTGTWAGPQTQEL 112
           QSCMKRHGIPMSHVARQVPSLDLKLCVLCFSGSLTAVLFLTGTWAGPQTQEL
Sbjct: 61  QSCMKRHGIPMSHVARQVPSLDLKLCVLCFSGSLTAVLFLTGTWAGPQTQEL 112


>gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]
          Length = 158

 Score =  163 bits (413), Expect = 2e-41
 Identities = 81/95 (85%), Positives = 83/95 (87%), Gaps = 2/95 (2%)

Query: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
          MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
Sbjct: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60

Query: 61 QSCMKRHGIPMSHVARQVPSLDLKL--CVLCFSGS 93
          QSCMKRHGIPMSHVARQ+   D      +LC   S
Sbjct: 61 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDES 95


>gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]
          Length = 158

 Score =  122 bits (305), Expect = 8e-29
 Identities = 61/95 (64%), Positives = 69/95 (72%), Gaps = 2/95 (2%)

Query: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
          MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENW +DS A S + +G  PD R 
Sbjct: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA 60

Query: 61 QSCMKRHGIPMSHVARQVPSLDLKL--CVLCFSGS 93
           SC++ HGI  +H ARQ+   D      +LC   S
Sbjct: 61 VSCLRNHGIHTAHKARQITKEDFATFDYILCMDES 95


>gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble
          [Homo sapiens]
          Length = 134

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 53 GNPPDYRGQSCMKRHGIPMSHVARQV 78
          G PPD RGQS  +RHGIPMSHVARQ+
Sbjct: 29 GTPPDSRGQSFTERHGIPMSHVARQI 54


>gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo
           sapiens]
          Length = 215

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 53  GNPPDYRGQSCMKRHGIPMSHVARQV 78
           G PPD RGQS  +RHGIPMSHVARQ+
Sbjct: 110 GTPPDSRGQSFTERHGIPMSHVARQI 135


>gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo
          sapiens]
          Length = 134

 Score = 47.0 bits (110), Expect = 3e-06
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query: 53 GNPPDYRGQSCMKRHGIPMSHVARQV 78
          G PPD RGQS  +RHGIPMSHVARQ+
Sbjct: 29 GTPPDSRGQSFTERHGIPMSHVARQI 54


>gi|12383082 DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae)
           [Homo sapiens]
          Length = 532

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)

Query: 20  SPIAEAVFRKLVTDQNISENWRVDSAATS-----GYEIGNPPDYRGQSCMKRHGIPMSHV 74
           +P+  +V  +   ++ IS+  R +    S     G + G P     QS    HG P+SH 
Sbjct: 427 APLGFSVHLRSTDEEFISQKTREEIGLGSPLVPMGDDDGGPEATGNQSAWMGHGSPLSHS 486

Query: 75  ARQVPSLDLKLCVLCFSGSLTAVLF 99
           ++  P L  +   L     LT V F
Sbjct: 487 SKGTPLLATEFRGLALKYLLTPVNF 511


>gi|5031877 lamin B1 [Homo sapiens]
          Length = 586

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 18/72 (25%), Positives = 32/72 (44%)

Query: 5   ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCM 64
           A +++L V L N C+S   +  FRK + ++ I+E  R         + G   +Y  +   
Sbjct: 185 ADETLLKVDLENRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQ 244

Query: 65  KRHGIPMSHVAR 76
             H +   H A+
Sbjct: 245 ALHEMREQHDAQ 256


>gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding
           protein-like protein [Homo sapiens]
          Length = 411

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 54  NPPDYRGQSCMKRHGIPMSHV 74
           +PP +R   C+ RHG P  H+
Sbjct: 107 DPPRHRPHLCLSRHGSPPHHL 127


>gi|38348211 golgi transport 1 homolog A [Homo sapiens]
          Length = 132

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 9   VLFVCLGNICRSPIAEAVFRKL 30
           V F  LGN+C  P   A+FR+L
Sbjct: 104 VAFGFLGNVCNIPFLGALFRRL 125


>gi|112363080 microtubule associated serine/threonine kinase 2 [Homo
           sapiens]
          Length = 1798

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 20  SPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCM---KRHGIPMSHVAR 76
           SP A A F  +   +     W + S  +SGY    P      SC    K H +P    A 
Sbjct: 209 SPNAPAHFSFVPARRTDGRRWSLASLPSSGYGTNTPSSTVSSSCSSQEKLHQLPFQPTAD 268

Query: 77  QV 78
           ++
Sbjct: 269 EL 270


>gi|4506455 reticulocalbin 1 precursor [Homo sapiens]
          Length = 331

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 26  VFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQS 62
           V++    D++   +W     AT GY +GNP ++   S
Sbjct: 123 VWKDYDRDKDDKISWEEYKQATYGYYLGNPAEFHDSS 159


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,478,620
Number of Sequences: 37866
Number of extensions: 173255
Number of successful extensions: 297
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 286
Number of HSP's gapped (non-prelim): 12
length of query: 112
length of database: 18,247,518
effective HSP length: 82
effective length of query: 30
effective length of database: 15,142,506
effective search space: 454275180
effective search space used: 454275180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.