Search of human proteins with 93277080

Search of human proteins with 93277080

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93277080 hypothetical protein LOC54916 [Homo sapiens]
         (707 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93277080 hypothetical protein LOC54916 [Homo sapiens]             1441   0.0  
gi|23503293 solute carrier family 16, member 11 [Homo sapiens]         33   0.70 
gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens]               32   1.6  
gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens]               32   1.6  
gi|13376611 zinc finger protein 703 [Homo sapiens]                     32   2.6  
gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]         31   3.5  
gi|110815815 centlein isoform 1 [Homo sapiens]                         30   7.7  
gi|167555106 centlein isoform 2 [Homo sapiens]                         30   7.7  

>gi|93277080 hypothetical protein LOC54916 [Homo sapiens]
          Length = 707

 Score = 1441 bits (3730), Expect = 0.0
 Identities = 707/707 (100%), Positives = 707/707 (100%)

Query: 1   MSPHGDGRGQAQGRAVRVGLRRSGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAA 60
           MSPHGDGRGQAQGRAVRVGLRRSGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAA
Sbjct: 1   MSPHGDGRGQAQGRAVRVGLRRSGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAA 60

Query: 61  HELGVAHPPGYPLFTLVAKLAITLFPFGSIAYRVNLLCGLFGAVAASLLFFTVFRLSGSS 120
           HELGVAHPPGYPLFTLVAKLAITLFPFGSIAYRVNLLCGLFGAVAASLLFFTVFRLSGSS
Sbjct: 61  HELGVAHPPGYPLFTLVAKLAITLFPFGSIAYRVNLLCGLFGAVAASLLFFTVFRLSGSS 120

Query: 121 AGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGA 180
           AGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGA
Sbjct: 121 AGGILAAGVFSFSRLTWQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGA 180

Query: 181 FCCGLSLCNQHTIILYVLCIIPWILFQLLKKKELSLGSLLKLSLYFSAGLLPYVHLPISS 240
           FCCGLSLCNQHTIILYVLCIIPWILFQLLKKKELSLGSLLKLSLYFSAGLLPYVHLPISS
Sbjct: 181 FCCGLSLCNQHTIILYVLCIIPWILFQLLKKKELSLGSLLKLSLYFSAGLLPYVHLPISS 240

Query: 241 YLNHARWTWGDQTTLQGFLTHFLREEYGTFSLAKSEIGSSMSEILLSQVTNMRTELSFNI 300
           YLNHARWTWGDQTTLQGFLTHFLREEYGTFSLAKSEIGSSMSEILLSQVTNMRTELSFNI
Sbjct: 241 YLNHARWTWGDQTTLQGFLTHFLREEYGTFSLAKSEIGSSMSEILLSQVTNMRTELSFNI 300

Query: 301 QALAVCANICLATKDRQNPSLVWLFTGMFCIYSLFFAWRANLDISKPLFMGVVERFWMQS 360
           QALAVCANICLATKDRQNPSLVWLFTGMFCIYSLFFAWRANLDISKPLFMGVVERFWMQS
Sbjct: 301 QALAVCANICLATKDRQNPSLVWLFTGMFCIYSLFFAWRANLDISKPLFMGVVERFWMQS 360

Query: 361 NAVVAVLAGIGLAAVVSETNRVLNSNGLQCLEWLSATLFVVYQIYSNYSVCDQRTNYVID 420
           NAVVAVLAGIGLAAVVSETNRVLNSNGLQCLEWLSATLFVVYQIYSNYSVCDQRTNYVID
Sbjct: 361 NAVVAVLAGIGLAAVVSETNRVLNSNGLQCLEWLSATLFVVYQIYSNYSVCDQRTNYVID 420

Query: 421 KFAKNLLTSMPHDAIILLRGDLPGNSLRYMHYCEGLRPDISLVDQEMMTYEWYLPKMAKH 480
           KFAKNLLTSMPHDAIILLRGDLPGNSLRYMHYCEGLRPDISLVDQEMMTYEWYLPKMAKH
Sbjct: 421 KFAKNLLTSMPHDAIILLRGDLPGNSLRYMHYCEGLRPDISLVDQEMMTYEWYLPKMAKH 480

Query: 481 LPGVNFPGNRWNPVEGILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWP 540
           LPGVNFPGNRWNPVEGILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWP
Sbjct: 481 LPGVNFPGNRWNPVEGILPSGMVTFNLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWP 540

Query: 541 WGSCDKLVPLEIVFNPEEWIKLTKSIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFI 600
           WGSCDKLVPLEIVFNPEEWIKLTKSIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFI
Sbjct: 541 WGSCDKLVPLEIVFNPEEWIKLTKSIYNWTEEYGRFDPSSWESVANEEMWQARMKTPFFI 600

Query: 601 FNLAETAHMPSKVKAQLYAQAYDLYKEIVYLQKEHPVNWHKNYAIACERMLRLQARDADP 660
           FNLAETAHMPSKVKAQLYAQAYDLYKEIVYLQKEHPVNWHKNYAIACERMLRLQARDADP
Sbjct: 601 FNLAETAHMPSKVKAQLYAQAYDLYKEIVYLQKEHPVNWHKNYAIACERMLRLQARDADP 660

Query: 661 EVLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQSLRNRKNV 707
           EVLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQSLRNRKNV
Sbjct: 661 EVLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQSLRNRKNV 707


>gi|23503293 solute carrier family 16, member 11 [Homo sapiens]
          Length = 471

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 137 WQWSIAAEVFSLNNLFVGLLMALTVHFEEAATAKERSKVAKIGAFCCGLSLCNQ 190
           W W +AA  F++N L  GLL +L + F + A   +RS  A+  A+   L+L  Q
Sbjct: 37  WGWVVAAAAFAINGLSYGLLRSLGLAFPDLAEHFDRS--AQDTAWISALALAVQ 88


>gi|34222389 HpaII tiny fragments locus 9C [Homo sapiens]
          Length = 625

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 458 PDISLVDQEMMTYEWYLPKMAKHLPGVNFPGNRWN------------PVEGILPSGMVTF 505
           P    ++++ +  E  L K+AK +   N     W             P+EG+ PS   T 
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQT- 237

Query: 506 NLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVFNPEEWIKLTKS 565
                 E   + E  V +G+   D T       +  G+C    P + V  PE   ++ K+
Sbjct: 238 ------EYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKA 291

Query: 566 IYNW--TEEYGRFDPSSW 581
              +  +  Y  +DP ++
Sbjct: 292 FQEFIRSTPYSAYDPETY 309


>gi|51173878 HpaII tiny fragments locus 9C [Homo sapiens]
          Length = 625

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 21/138 (15%)

Query: 458 PDISLVDQEMMTYEWYLPKMAKHLPGVNFPGNRWN------------PVEGILPSGMVTF 505
           P    ++++ +  E  L K+AK +   N     W             P+EG+ PS   T 
Sbjct: 179 PYAEQLERKQLECEQVLQKLAKEIGSTNRALLPWLLEQRHKHNKACCPLEGVRPSPQQT- 237

Query: 506 NLYHFLEVNKQKETFVCIGIHEGDPTWKKNYSLWPWGSCDKLVPLEIVFNPEEWIKLTKS 565
                 E   + E  V +G+   D T       +  G+C    P + V  PE   ++ K+
Sbjct: 238 ------EYRNKCEFLVGVGVDGEDNTVGCRLGKYKGGTCAVAAPFDTVHIPEATKQVVKA 291

Query: 566 IYNW--TEEYGRFDPSSW 581
              +  +  Y  +DP ++
Sbjct: 292 FQEFIRSTPYSAYDPETY 309


>gi|13376611 zinc finger protein 703 [Homo sapiens]
          Length = 590

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 2/88 (2%)

Query: 23  SGGIRGGVAVFAAVAAVFTFTLPPSVPGGDSGELITAAHELGVA--HPPGYPLFTLVAKL 80
           + G+    A  AA A+      PP+ PG      +   H LG++  HP G    +    L
Sbjct: 500 ASGLGSAAAAAAAAASCHLHLPPPAAPGSPGSLSLRNPHTLGLSRYHPYGKSHLSTAGGL 559

Query: 81  AITLFPFGSIAYRVNLLCGLFGAVAASL 108
           A+   P     Y    L G   A A++L
Sbjct: 560 AVPSLPTAGPYYSPYALYGQRLASASAL 587


>gi|188536036 cytochrome b reductase 1 isoform 1 [Homo sapiens]
          Length = 286

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 10/82 (12%)

Query: 331 IYSLFFAWRANLDISKPLFMGVVERFWMQSNAVVAVLAGIGLAAVVS--ETNRVLNSNGL 388
           +Y L + W+ +  + K +  G+        NAV A+LA I + AV      N + N   L
Sbjct: 68  VYRLPWTWKCSKLLMKSIHAGL--------NAVAAILAIISVVAVFENHNVNNIANMYSL 119

Query: 389 QCLEWLSATLFVVYQIYSNYSV 410
                L A +  + Q+ S +SV
Sbjct: 120 HSWVGLIAVICYLLQLLSGFSV 141


>gi|110815815 centlein isoform 1 [Homo sapiens]
          Length = 1406

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 605 ETAHMPSKVKAQLYAQAYDLYKEIVYLQKEHPVNWHKNYAIACE---RMLRLQARDADPE 661
           + AH+  K K    A+       ++  +KE  V+  K  A++ +   +   L  +D D  
Sbjct: 267 QEAHL-RKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDIT 325

Query: 662 VLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQS-LRNRKNV 707
           ++  E      LY Q + +  QQA+++  L+ L  + Q  LRN+++V
Sbjct: 326 LVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDV 372


>gi|167555106 centlein isoform 2 [Homo sapiens]
          Length = 391

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 5/107 (4%)

Query: 605 ETAHMPSKVKAQLYAQAYDLYKEIVYLQKEHPVNWHKNYAIACE---RMLRLQARDADPE 661
           + AH+  K K    A+       ++  +KE  V+  K  A++ +   +   L  +D D  
Sbjct: 267 QEAHL-RKEKYSTDAKIKTFEDNLIEARKEVEVSQSKYNALSLQLSNKQTELIQKDMDIT 325

Query: 662 VLLSETIRHFRLYSQKAPNDPQQADILGALKHLRKELQS-LRNRKNV 707
           ++  E      LY Q + +  QQA+++  L+ L  + Q  LRN+++V
Sbjct: 326 LVRKELQELQNLYKQNSTHTAQQAELIQQLQVLNMDTQKVLRNQEDV 372


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,500,183
Number of Sequences: 37866
Number of extensions: 1159090
Number of successful extensions: 3379
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3376
Number of HSP's gapped (non-prelim): 9
length of query: 707
length of database: 18,247,518
effective HSP length: 109
effective length of query: 598
effective length of database: 14,120,124
effective search space: 8443834152
effective search space used: 8443834152
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.