Search of human proteins with 8922461

Search of human proteins with 8922461

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8922461 transmembrane protein 38B [Homo sapiens]
         (291 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8922461 transmembrane protein 38B [Homo sapiens]                   602   e-173
gi|13129060 transmembrane protein 38A [Homo sapiens]                  245   4e-65
gi|110349759 NSL1, MIND kinetochore complex component isoform 1 ...    30   1.9  
gi|239756880 PREDICTED: hypothetical protein [Homo sapiens]            29   4.3  
gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo ...    29   4.3  
gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]       29   4.3  

>gi|8922461 transmembrane protein 38B [Homo sapiens]
          Length = 291

 Score =  602 bits (1553), Expect = e-173
 Identities = 291/291 (100%), Positives = 291/291 (100%)

Query: 1   MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFG 60
           MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFG
Sbjct: 1   MDSPWDELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFG 60

Query: 61  GGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEV 120
           GGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEV
Sbjct: 61  GGILSCLLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEV 120

Query: 121 TRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMS 180
           TRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMS
Sbjct: 121 TRTWKIVGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMS 180

Query: 181 YPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTL 240
           YPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTL
Sbjct: 181 YPAKVTLLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTL 240

Query: 241 SWMLFGWQQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDNVKKKHTKKNE 291
           SWMLFGWQQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDNVKKKHTKKNE
Sbjct: 241 SWMLFGWQQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDNVKKKHTKKNE 291


>gi|13129060 transmembrane protein 38A [Homo sapiens]
          Length = 299

 Score =  245 bits (625), Expect = 4e-65
 Identities = 122/292 (41%), Positives = 192/292 (65%), Gaps = 14/292 (4%)

Query: 7   ELALAFSRTSMFPFFDIAHYLVSVMAVKRQPGAAALAWKNPISSWFTAMLHCFGGGILSC 66
           ELAL+FSR  +FP FD+++++VS++ +K +PGA  L+ ++PI+SW  AMLHCFG  IL+ 
Sbjct: 11  ELALSFSRVPLFPVFDLSYFIVSILYLKYEPGAVELSRRHPIASWLCAMLHCFGSYILAD 70

Query: 67  LLLAEPPLKFLANHTNILLASSIWYITFFCPHDLVSQGYSYLPVQLLASGMKEVTRTWKI 126
           LLL EP + + +N+++ILLAS++WY+ FFCP DL  +   +LPV+L+   MKEV R  KI
Sbjct: 71  LLLGEPLIDYFSNNSSILLASAVWYLIFFCPLDLFYKCVCFLPVKLIFVAMKEVVRVRKI 130

Query: 127 VGGVTHANSYYKNGWIVMIAIGWARGAGGTIITNFERLVKGDWKPEGDEWLKMSYPAKVT 186
             G+ HA+ +Y +GW VMIA GW +G+G  +++NFE+L++G WKPE +E L MS+P K +
Sbjct: 131 AVGIHHAHHHYHHGWFVMIATGWVKGSGVALMSNFEQLLRGVWKPETNEILHMSFPTKAS 190

Query: 187 LLGSVIFTFQHTQHLAISKHNLMFLYTIFIVATKITMMTTQTSTMTFAPFEDTLSWMLFG 246
           L G+++FT Q T+ L +SK +L+F++T+F+V+ K+ +  T + +  F   E  +  +LFG
Sbjct: 191 LYGAILFTLQQTRWLPVSKASLIFIFTLFMVSCKVFLTATHSHSSPFDALEGYICPVLFG 250

Query: 247 WQQPFSSC----EKKSEAKSPSNG-----VGSLASKPVDVASDNVKKKHTKK 289
                S+C       +   S S G       ++ +K  +  S+  +KK  KK
Sbjct: 251 -----SACGGDHHHDNHGGSHSGGGPGAQHSAMPAKSKEELSEGSRKKKAKK 297


>gi|110349759 NSL1, MIND kinetochore complex component isoform 1
           [Homo sapiens]
          Length = 281

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 6/46 (13%)

Query: 248 QQPFSSCEKKSEAKSPSNGVGSLASKPVDVASDN-----VKKKHTK 288
           Q+ FSSC +K +AK P N +  + + P + AS       +K+K TK
Sbjct: 218 QEVFSSCHRKPDAK-PENFITQIETTPTETASRKTSDMVLKRKQTK 262


>gi|239756880 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 376

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 248 QQPFSSCEKKSEAKS--------PSNGVGSL-ASKPVDVASDNVKKKH 286
           Q P   CEK S + S        P  G+G   A+ P D  SD+V ++H
Sbjct: 287 QSPSGGCEKGSRSVSGSRRSEPRPPAGLGDARAASPADTVSDDVSRRH 334


>gi|239751374 PREDICTED: hypothetical protein XP_002347830 [Homo
           sapiens]
          Length = 376

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 9/48 (18%)

Query: 248 QQPFSSCEKKSEAKS--------PSNGVGSL-ASKPVDVASDNVKKKH 286
           Q P   CEK S + S        P  G+G   A+ P D  SD+V ++H
Sbjct: 287 QSPSGGCEKGSRSVSGSRRSEPRPPAGLGDARAASPADTVSDDVSRRH 334


>gi|38490688 immunoglobulin superfamily, member 10 [Homo sapiens]
          Length = 2623

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 8/85 (9%)

Query: 210  FLYTIFIVATKITMMTT---QTSTMTFAPFEDTLSWMLFGWQQPFSSCEKKSEAKSPSNG 266
            F+Y+  + +T +  +TT   Q S +T +P+ +   W      +P+S   +K +    S  
Sbjct: 1541 FIYSNLLHSTPMPALTTVKSQNSKLTPSPWAENQFW-----HKPYSEIAEKGKKPEVSML 1595

Query: 267  VGSLASKPVDVASDNVKKKHTKKNE 291
              +  S+   + SD   +K+TKK++
Sbjct: 1596 ATTGLSEATTLVSDWDGQKNTKKSD 1620


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,066,435
Number of Sequences: 37866
Number of extensions: 448444
Number of successful extensions: 912
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 6
length of query: 291
length of database: 18,247,518
effective HSP length: 101
effective length of query: 190
effective length of database: 14,423,052
effective search space: 2740379880
effective search space used: 2740379880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.