Guide to the Human Genome
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Name: ATP5SL Sequence: fasta or formatted (257aa) NCBI GI: 8922303
Description:

ATP5S-like

Referenced in:

Oxidative Phosphorylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         20           2
 C cysteine            2.7          7           1
 D aspartate           5.8         15           2
 E glutamate           7.4         19           2
 F phenylalanine       3.1          8           2
 G glycine             7.0         18           2
 H histidine           2.7          7           2
 I isoleucine          3.5          9           1
 K lysine              4.7         12           3
 L leucine            12.8         33           2
 M methionine          1.6          4           1
 N asparagine          3.5          9           1
 P proline             5.8         15           1
 Q glutamine           4.7         12           1
 R arginine            7.0         18           2
 S serine              5.8         15           1
 T threonine           1.9          5           1
 V valine              5.8         15           2
 W tryptophan          2.7          7           1
 Y tyrosine            3.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP5S-like 
ATP5S                 0.086   ATP synthase, H+ transporting, mitochondrial F0 comp...
FBXL16                0.051   F-box and leucine-rich repeat protein 16 
FBXL19                0.033   F-box and leucine-rich repeat protein 19 
FBXL14                0.029   F-box and leucine-rich repeat protein 14 
FBXL13                0.029   F-box and leucine-rich repeat protein 13 isoform 1 ...
FBXL4                 0.025   F-box and leucine-rich repeat protein 4 
FBXL20                0.025   F-box and leucine-rich repeat protein 20 
FBXL7                 0.023   F-box and leucine-rich repeat protein 7 
FBXL15                0.023   F-box and leucine-rich repeat protein 15 
FBXL2                 0.022   F-box and leucine-rich repeat protein 2 
PPP1R15B              0.018   protein phosphatase 1, regulatory subunit 15B [Homo...
FBXL13                0.016   F-box and leucine-rich repeat protein 13 isoform 2 ...
FBXL17                0.006   F-box and leucine-rich repeat protein 17 
LRRC29                0.006   F-box and leucine-rich repeat protein 9 
LRRC29                0.006   F-box and leucine-rich repeat protein 9 
FASN                  0.006   fatty acid synthase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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