Search of human proteins with 89037123

Search of human proteins with 89037123

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
         (72 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|169206212 PREDICTED: hypothetical protein isoform 1 [Homo sap...   154   1e-38
gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo sapi...   154   1e-38
gi|89036792 PREDICTED: hypothetical protein isoform 2 [Homo sapi...   154   1e-38
gi|169206214 PREDICTED: hypothetical protein isoform 2 [Homo sap...   135   9e-33
gi|169206521 PREDICTED: hypothetical protein isoform 1 [Homo sap...   135   9e-33
gi|169205880 PREDICTED: hypothetical protein isoform 1 [Homo sap...   135   9e-33
gi|61175251 hypothetical protein LOC388910 [Homo sapiens]              27   4.5  
gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]            26   5.9  
gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]            26   5.9  
gi|55769552 polymerase (RNA) III (DNA directed) polypeptide D [H...    26   5.9  
gi|140561070 RIM-binding protein 2 [Homo sapiens]                      26   7.7  

>gi|169206212 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 72

 Score =  154 bits (390), Expect = 1e-38
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
          MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60

Query: 61 MQLRGTLYLSYT 72
          MQLRGTLYLSYT
Sbjct: 61 MQLRGTLYLSYT 72


>gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 72

 Score =  154 bits (390), Expect = 1e-38
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
          MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60

Query: 61 MQLRGTLYLSYT 72
          MQLRGTLYLSYT
Sbjct: 61 MQLRGTLYLSYT 72


>gi|89036792 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 72

 Score =  154 bits (390), Expect = 1e-38
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
          MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60

Query: 61 MQLRGTLYLSYT 72
          MQLRGTLYLSYT
Sbjct: 61 MQLRGTLYLSYT 72


>gi|169206214 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 80

 Score =  135 bits (339), Expect = 9e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
          MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60

Query: 61 MQ 62
          MQ
Sbjct: 61 MQ 62


>gi|169206521 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 80

 Score =  135 bits (339), Expect = 9e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
          MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60

Query: 61 MQ 62
          MQ
Sbjct: 61 MQ 62


>gi|169205880 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 80

 Score =  135 bits (339), Expect = 9e-33
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60
          MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE
Sbjct: 1  MPFLLLKKHSHSQSQDCWGDNNAAGDLEAPGGPQRLRSSPRRAADQAEEGWIHMLRGDRE 60

Query: 61 MQ 62
          MQ
Sbjct: 61 MQ 62


>gi|61175251 hypothetical protein LOC388910 [Homo sapiens]
          Length = 113

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 36 LRSSPRRAADQA-----EEGWIHMLRGDREMQLRGT 66
          + S+ R A D       E GW+H+L G + +  RGT
Sbjct: 1  MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGT 36


>gi|169208604 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 223

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 10 SHSQSQDCWGDNNAAGDLEAPGGP---QRLRSSPRRAADQAEEGW 51
          S  +S   W +  A  +L+ PG P    RL  S R AA      W
Sbjct: 49 SEMESDGVWHEPRACSELKVPGTPPLLSRLGHSARGAAGGGGRDW 93


>gi|113425231 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 223

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 10 SHSQSQDCWGDNNAAGDLEAPGGP---QRLRSSPRRAADQAEEGW 51
          S  +S   W +  A  +L+ PG P    RL  S R AA      W
Sbjct: 49 SEMESDGVWHEPRACSELKVPGTPPLLSRLGHSARGAAGGGGRDW 93


>gi|55769552 polymerase (RNA) III (DNA directed) polypeptide D
          [Homo sapiens]
          Length = 398

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 20 DNNAAGDLEAPGGPQRLRSSP-----RRAADQAEEGWIHMLRGDREMQLRGTLYLSYT 72
          + NAAG+   PGGP+ L +       RR A     G +  +R  R++ L G    ++T
Sbjct: 3  EGNAAGEPSTPGGPRPLLTGARGLIGRRPAPPLTPGRLPSIR-SRDLTLGGVKKKTFT 59


>gi|140561070 RIM-binding protein 2 [Homo sapiens]
          Length = 1052

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 5/43 (11%)

Query: 11  HSQSQDCWGDNNAAGD-----LEAPGGPQRLRSSPRRAADQAE 48
           H++  + W  + A G      LE P GP R   SP R   Q +
Sbjct: 618 HARMDEAWEQSRAPGPVHGHMLEPPVGPGRRSPSPSRILPQPQ 660


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,148,675
Number of Sequences: 37866
Number of extensions: 127339
Number of successful extensions: 433
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 426
Number of HSP's gapped (non-prelim): 11
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.