Search of human proteins with 87080817

Search of human proteins with 87080817

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|87080817 basement membrane-induced gene isoform 2 [Homo
sapiens]
         (123 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|87080817 basement membrane-induced gene isoform 2 [Homo sapiens]   250   2e-67
gi|157738677 basement membrane-induced gene isoform 3 [Homo sapi...   160   2e-40
gi|87080807 basement membrane-induced gene isoform 1 [Homo sapiens]   160   2e-40
gi|58218986 thymocyte selection pathway associated [Homo sapiens]      80   5e-16
gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor [...    27   3.0  
gi|103472027 fms-related tyrosine kinase 4 isoform 2 precursor [...    27   3.0  
gi|45333883 kelch repeat and BTB (POZ) domain-containing 6 [Homo...    27   5.1  
gi|14149861 solute carrier family 7, member 6 opposite strand [H...    27   5.1  
gi|4503647 coagulation factor VIII isoform a precursor [Homo sap...    26   6.7  

>gi|87080817 basement membrane-induced gene isoform 2 [Homo sapiens]
          Length = 123

 Score =  250 bits (639), Expect = 2e-67
 Identities = 123/123 (100%), Positives = 123/123 (100%)

Query: 1   MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
           MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1   MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60

Query: 61  VCENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGP 120
           VCENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGP
Sbjct: 61  VCENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGP 120

Query: 121 QAR 123
           QAR
Sbjct: 121 QAR 123


>gi|157738677 basement membrane-induced gene isoform 3 [Homo
          sapiens]
          Length = 643

 Score =  160 bits (406), Expect = 2e-40
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
          MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1  MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60

Query: 61 VCENPKTSQTMELAPNFQ 78
          VCENPKTSQTMELAPNFQ
Sbjct: 61 VCENPKTSQTMELAPNFQ 78


>gi|87080807 basement membrane-induced gene isoform 1 [Homo
          sapiens]
          Length = 260

 Score =  160 bits (406), Expect = 2e-40
 Identities = 78/78 (100%), Positives = 78/78 (100%)

Query: 1  MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60
          MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV
Sbjct: 1  MEPVPLQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKV 60

Query: 61 VCENPKTSQTMELAPNFQ 78
          VCENPKTSQTMELAPNFQ
Sbjct: 61 VCENPKTSQTMELAPNFQ 78



 Score = 94.7 bits (234), Expect = 2e-20
 Identities = 45/52 (86%), Positives = 47/52 (90%)

Query: 72  ELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR 123
           E+     +FSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR
Sbjct: 209 EIQAIMHIFSSLRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGPQAR 260


>gi|58218986 thymocyte selection pathway associated [Homo sapiens]
          Length = 641

 Score = 79.7 bits (195), Expect = 5e-16
 Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 8/106 (7%)

Query: 6   LQDFVRALDPASLPRVLRVCSGVYFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVC--- 62
           L++FV +LD  +LPRVL + +G+Y EGSIYE+ GNECC STG++IK+T ++++K++    
Sbjct: 5   LEEFVHSLDLRTLPRVLEIQAGIYLEGSIYEMFGNECCFSTGEVIKITGLKVKKIIAEIC 64

Query: 63  ---ENPKTSQTMELAPNFQVFSSLRIAATRSAAQTQGEDLARVHQG 105
              E  ++ Q  EL  NF      +I A ++   T  E    +H G
Sbjct: 65  EQIEGCESLQPFELPMNFP--GLFKIVADKTPYLTMEEITRTIHIG 108


>gi|104294888 fms-related tyrosine kinase 4 isoform 1 precursor [Homo
            sapiens]
          Length = 1363

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 47   GDLIKVTQVRLQKVVCENPKTSQTMELAPNFQVFS-SLRIA---ATRSAAQTQGEDLARV 102
            GDL++   ++ ++ VC  P++SQ+ E     QV + +L IA   A  S    Q   LA  
Sbjct: 1170 GDLLQGRGLQEEEEVCMAPRSSQSSEEGSFSQVSTMALHIAQADAEDSPPSLQRHSLAAR 1229

Query: 103  HQGWLQYVQQDSCPQEGPQAR 123
            +  W+ +     C   G + R
Sbjct: 1230 YYNWVSF---PGCLARGAETR 1247


>gi|103472027 fms-related tyrosine kinase 4 isoform 2 precursor [Homo
            sapiens]
          Length = 1298

 Score = 27.3 bits (59), Expect = 3.0
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 47   GDLIKVTQVRLQKVVCENPKTSQTMELAPNFQVFS-SLRIA---ATRSAAQTQGEDLARV 102
            GDL++   ++ ++ VC  P++SQ+ E     QV + +L IA   A  S    Q   LA  
Sbjct: 1170 GDLLQGRGLQEEEEVCMAPRSSQSSEEGSFSQVSTMALHIAQADAEDSPPSLQRHSLAAR 1229

Query: 103  HQGWLQYVQQDSCPQEGPQAR 123
            +  W+ +     C   G + R
Sbjct: 1230 YYNWVSF---PGCLARGAETR 1247


>gi|45333883 kelch repeat and BTB (POZ) domain-containing 6 [Homo
           sapiens]
          Length = 674

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 29  YFEGSIYEISGNECCLSTGDLIKVTQVRLQKVVCENPKTSQTMELAPNFQVFSSLRIAAT 88
           Y  G IY + G +          +T V+L++V C N K +Q   +AP    F S  +   
Sbjct: 432 YLNGYIYILGGRD---------PITGVKLKEVECYNVKRNQWALVAPLPHSFLSFDLMVI 482

Query: 89  R 89
           R
Sbjct: 483 R 483


>gi|14149861 solute carrier family 7, member 6 opposite strand [Homo
           sapiens]
          Length = 309

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 83  LRIAATRSAAQTQGEDLARVHQGWLQYVQQDSCPQEGP 120
           LR  A  SAAQ   EDL R  +  + ++    C QE P
Sbjct: 30  LRSDAVESAAQKTSEDLERAAENNVFHLVATVCSQEEP 67


>gi|4503647 coagulation factor VIII isoform a precursor [Homo
           sapiens]
          Length = 2351

 Score = 26.2 bits (56), Expect = 6.7
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 103 HQGWLQYVQQDSCPQEGPQAR 123
           H G   YV+ DSCP+E PQ R
Sbjct: 336 HDGMEAYVKVDSCPEE-PQLR 355


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.132    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,775,084
Number of Sequences: 37866
Number of extensions: 172403
Number of successful extensions: 349
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 10
length of query: 123
length of database: 18,247,518
effective HSP length: 89
effective length of query: 34
effective length of database: 14,877,444
effective search space: 505833096
effective search space used: 505833096
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.