Search of human proteins with 7705720

Search of human proteins with 7705720

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705720 mediator of cell motility 1 isoform 1 [Homo sapiens]
         (297 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705720 mediator of cell motility 1 isoform 1 [Homo sapiens]       613   e-176
gi|212286159 mediator of cell motility 1 isoform 2 [Homo sapiens]     549   e-156
gi|74229025 membralin isoform 1 [Homo sapiens]                         32   0.67 
gi|15529970 membralin isoform 2 [Homo sapiens]                         32   0.67 
gi|21361625 Sec5 protein [Homo sapiens]                                31   1.1  
gi|169171626 PREDICTED: hypothetical protein [Homo sapiens]            29   5.7  
gi|89026075 PREDICTED: hypothetical protein [Homo sapiens]             29   5.7  
gi|89025126 PREDICTED: hypothetical protein [Homo sapiens]             29   5.7  
gi|239508901 PREDICTED: hypothetical protein [Homo sapiens]            29   5.7  
gi|40254947 thioredoxin-related transmembrane protein 4 [Homo sa...    29   5.7  

>gi|7705720 mediator of cell motility 1 isoform 1 [Homo sapiens]
          Length = 297

 Score =  613 bits (1580), Expect = e-176
 Identities = 297/297 (100%), Positives = 297/297 (100%)

Query: 1   MSNRVVCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAA 60
           MSNRVVCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAA
Sbjct: 1   MSNRVVCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAA 60

Query: 61  HAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFE 120
           HAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFE
Sbjct: 61  HAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFE 120

Query: 121 RMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP 180
           RMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP
Sbjct: 121 RMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP 180

Query: 181 SNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYH 240
           SNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYH
Sbjct: 181 SNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYH 240

Query: 241 NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTVH 297
           NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTVH
Sbjct: 241 NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTVH 297


>gi|212286159 mediator of cell motility 1 isoform 2 [Homo sapiens]
          Length = 274

 Score =  549 bits (1414), Expect = e-156
 Identities = 274/297 (92%), Positives = 274/297 (92%), Gaps = 23/297 (7%)

Query: 1   MSNRVVCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAPHAGYTYCGSCAA 60
           MSNRVVCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAP            
Sbjct: 1   MSNRVVCREASHAGSWYTASGPQLNAQLEGWLSQVQSTKRPARAIIAP------------ 48

Query: 61  HAYKQVDPSITRRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFE 120
                      RRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFE
Sbjct: 49  -----------RRIFILGPSHHVPLSRCALSSVDIYRTPLYDLRIDQKIYGELWKTGMFE 97

Query: 121 RMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP 180
           RMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP
Sbjct: 98  RMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADP 157

Query: 181 SNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYH 240
           SNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYH
Sbjct: 158 SNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYH 217

Query: 241 NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTVH 297
           NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTVH
Sbjct: 218 NTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRNWQDSSVSYAAGALTVH 274


>gi|74229025 membralin isoform 1 [Homo sapiens]
          Length = 620

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 128 EDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLAD 179
           +DE+ +E  L Y    +     +   IPV+V  L  +++Q FG  FS+ L D
Sbjct: 206 QDEYIVEYSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLD 257


>gi|15529970 membralin isoform 2 [Homo sapiens]
          Length = 408

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 128 EDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLAD 179
           +DE+ +E  L Y    +     +   IPV+V  L  +++Q FG  FS+ L D
Sbjct: 206 QDEYIVEYSLEYGFLRLSQATRQRLSIPVMVVTLDPTRDQCFGDRFSRLLLD 257


>gi|21361625 Sec5 protein [Homo sapiens]
          Length = 924

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 169 FGKLFSKY-LADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQL 227
           FG +   + L     L +V S+ C+  +    +  +  +   ++ IE + ++ M+ +++L
Sbjct: 696 FGSIHEDFSLTSEQRLLIVLSNCCYLERHTFLNIAEHFEKHNFQGIEKITQVSMASLKEL 755

Query: 228 DPVSFSNYLKKYHNTICGRHPIGV 251
           D   F NY++   + I G    G+
Sbjct: 756 DQRLFENYIELKADPIVGSLEPGI 779


>gi|169171626 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 35 VQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDP------SITRRIFI----LGPSHHVP 84
          V ++++P RA + PHAG +   SC A A     P      S  +  F+     GPS  +P
Sbjct: 3  VPASRQPPRARLLPHAGPSRPSSCLAAASPGPAPAQPDGVSQPKAPFLNVGPSGPSSCLP 62

Query: 85 LSRCA 89
          L  CA
Sbjct: 63 LMACA 67


>gi|89026075 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 35 VQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDP------SITRRIFI----LGPSHHVP 84
          V ++++P RA + PHAG +   SC A A     P      S  +  F+     GPS  +P
Sbjct: 3  VPASRQPPRARLLPHAGPSRPSSCLAAASPGPAPAQPDGVSQPKAPFLNVGPSGPSSCLP 62

Query: 85 LSRCA 89
          L  CA
Sbjct: 63 LMACA 67


>gi|89025126 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 35 VQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDP------SITRRIFI----LGPSHHVP 84
          V ++++P RA + PHAG +   SC A A     P      S  +  F+     GPS  +P
Sbjct: 3  VPASRQPPRARLLPHAGPSRPSSCLAAASPGPAPAQPDGVSQPKAPFLNVGPSGPSSCLP 62

Query: 85 LSRCA 89
          L  CA
Sbjct: 63 LMACA 67


>gi|239508901 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 205

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 10/65 (15%)

Query: 35 VQSTKRPARAIIAPHAGYTYCGSCAAHAYKQVDP------SITRRIFI----LGPSHHVP 84
          V ++++P RA + PHAG +   SC A A     P      S  +  F+     GPS  +P
Sbjct: 3  VPASRQPPRARLLPHAGPSRPSSCLAAASPGPAPAQPDGVSQPKAPFLNVGPSGPSSCLP 62

Query: 85 LSRCA 89
          L  CA
Sbjct: 63 LMACA 67


>gi|40254947 thioredoxin-related transmembrane protein 4 [Homo
          sapiens]
          Length = 349

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 21 GPQLNAQLEGWLSQVQSTKRPARAIIAP 48
          GPQL A L  W++ V +T  P  A + P
Sbjct: 7  GPQLTALLAAWIAAVAATAGPEEAALPP 34


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.132    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,010,334
Number of Sequences: 37866
Number of extensions: 457424
Number of successful extensions: 975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 968
Number of HSP's gapped (non-prelim): 10
length of query: 297
length of database: 18,247,518
effective HSP length: 102
effective length of query: 195
effective length of database: 14,385,186
effective search space: 2805111270
effective search space used: 2805111270
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.