Search of human proteins with 7705433

Search of human proteins with 7705433

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|7705433 eukaryotic translation initiation factor 3 subunit 6
interacting protein [Homo sapiens]
         (564 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|7705433 eukaryotic translation initiation factor 3 subunit 6 ...  1150   0.0  
gi|169194708 PREDICTED: similar to eukaryotic translation initia...   496   e-140
gi|169201966 PREDICTED: similar to eukaryotic translation initia...   496   e-140
gi|169192141 PREDICTED: similar to eukaryotic translation initia...   496   e-140
gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]            36   0.082
gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]      32   1.2  
gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens]                     32   1.5  
gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]           31   3.4  
gi|207113149 haloacid dehalogenase-like hydrolase domain contain...    31   3.4  
gi|197382691 haloacid dehalogenase-like hydrolase domain contain...    30   4.5  
gi|156139127 hypothetical protein LOC80007 [Homo sapiens]              30   4.5  
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           30   5.9  
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          30   5.9  
gi|157952215 protein tyrosine phosphatase, receptor type, B isof...    30   7.7  
gi|157952213 protein tyrosine phosphatase, receptor type, B isof...    30   7.7  
gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [H...    30   7.7  

>gi|7705433 eukaryotic translation initiation factor 3 subunit 6
           interacting protein [Homo sapiens]
          Length = 564

 Score = 1150 bits (2975), Expect = 0.0
 Identities = 564/564 (100%), Positives = 564/564 (100%)

Query: 1   MSYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60
           MSYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH
Sbjct: 1   MSYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYEQQTYQVIPEVIKNFIQYFH 60

Query: 61  KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120
           KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP
Sbjct: 61  KTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAP 120

Query: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180
           QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN
Sbjct: 121 QVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNYILNADGPAPLELPN 180

Query: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240
           QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI
Sbjct: 181 QWLWDIIDEFIYQFQSFSQYRCKTAKKSEEEIDFLRSNPKIWNVHSVLNVLHSLVDKSNI 240

Query: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300
           NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN
Sbjct: 241 NRQLEVYTSGGDPESVAGEYGRHSLYKMLGYFSLVGLLRLHSLLGDYYQAIKVLENIELN 300

Query: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360
           KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI
Sbjct: 301 KKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRTTYKYEMI 360

Query: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKF 420
           NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKF
Sbjct: 361 NKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELFSYSCPKF 420

Query: 421 LSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLD 480
           LSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLD
Sbjct: 421 LSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVAKLAGFLD 480

Query: 481 LTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYG 540
           LTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYG
Sbjct: 481 LTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADTKVARRYG 540

Query: 541 DFFIRQIHKFEELNRTLKKMGQRP 564
           DFFIRQIHKFEELNRTLKKMGQRP
Sbjct: 541 DFFIRQIHKFEELNRTLKKMGQRP 564


>gi|169194708 PREDICTED: similar to eukaryotic translation
           initiation factor 3 subunit 6 interacting protein [Homo
           sapiens]
          Length = 316

 Score =  496 bits (1277), Expect = e-140
 Identities = 247/271 (91%), Positives = 256/271 (94%)

Query: 294 LENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRT 353
           L +IELNKKS+YSRVPECQVTTYYYVGFAYLMM  YQDAIRVFANILLYIQRTKSMFQRT
Sbjct: 46  LFSIELNKKSIYSRVPECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRT 105

Query: 354 TYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELF 413
           TYKYEMINKQNEQMHALLAIALTMYPM IDESIHLQ  +KY +KML MQKGDP+VYEELF
Sbjct: 106 TYKYEMINKQNEQMHALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELF 165

Query: 414 SYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 473
           SY CPKFLSPVVPNYDNVHPNYHKEPFLQQ KVFSDEVQQQAQLSTIRSFLKLYTTMPVA
Sbjct: 166 SYFCPKFLSPVVPNYDNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 225

Query: 474 KLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADT 533
           KLAGFLDLTEQEFRIQL VFKHK+KNLVWTS I+ LD EFQSASEVDFYIDKDMIHI DT
Sbjct: 226 KLAGFLDLTEQEFRIQLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDT 285

Query: 534 KVARRYGDFFIRQIHKFEELNRTLKKMGQRP 564
           KVARRYG+FFIRQIH+FEELNRTLKKMGQRP
Sbjct: 286 KVARRYGNFFIRQIHRFEELNRTLKKMGQRP 316


>gi|169201966 PREDICTED: similar to eukaryotic translation
           initiation factor 3 subunit 6 interacting protein [Homo
           sapiens]
          Length = 316

 Score =  496 bits (1277), Expect = e-140
 Identities = 247/271 (91%), Positives = 256/271 (94%)

Query: 294 LENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRT 353
           L +IELNKKS+YSRVPECQVTTYYYVGFAYLMM  YQDAIRVFANILLYIQRTKSMFQRT
Sbjct: 46  LFSIELNKKSIYSRVPECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRT 105

Query: 354 TYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELF 413
           TYKYEMINKQNEQMHALLAIALTMYPM IDESIHLQ  +KY +KML MQKGDP+VYEELF
Sbjct: 106 TYKYEMINKQNEQMHALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELF 165

Query: 414 SYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 473
           SY CPKFLSPVVPNYDNVHPNYHKEPFLQQ KVFSDEVQQQAQLSTIRSFLKLYTTMPVA
Sbjct: 166 SYFCPKFLSPVVPNYDNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 225

Query: 474 KLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADT 533
           KLAGFLDLTEQEFRIQL VFKHK+KNLVWTS I+ LD EFQSASEVDFYIDKDMIHI DT
Sbjct: 226 KLAGFLDLTEQEFRIQLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDT 285

Query: 534 KVARRYGDFFIRQIHKFEELNRTLKKMGQRP 564
           KVARRYG+FFIRQIH+FEELNRTLKKMGQRP
Sbjct: 286 KVARRYGNFFIRQIHRFEELNRTLKKMGQRP 316


>gi|169192141 PREDICTED: similar to eukaryotic translation
           initiation factor 3 subunit 6 interacting protein [Homo
           sapiens]
          Length = 316

 Score =  496 bits (1277), Expect = e-140
 Identities = 247/271 (91%), Positives = 256/271 (94%)

Query: 294 LENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVFANILLYIQRTKSMFQRT 353
           L +IELNKKS+YSRVPECQVTTYYYVGFAYLMM  YQDAIRVFANILLYIQRTKSMFQRT
Sbjct: 46  LFSIELNKKSIYSRVPECQVTTYYYVGFAYLMMCHYQDAIRVFANILLYIQRTKSMFQRT 105

Query: 354 TYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKMLRMQKGDPQVYEELF 413
           TYKYEMINKQNEQMHALLAIALTMYPM IDESIHLQ  +KY +KML MQKGDP+VYEELF
Sbjct: 106 TYKYEMINKQNEQMHALLAIALTMYPMSIDESIHLQRWDKYSNKMLCMQKGDPEVYEELF 165

Query: 414 SYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 473
           SY CPKFLSPVVPNYDNVHPNYHKEPFLQQ KVFSDEVQQQAQLSTIRSFLKLYTTMPVA
Sbjct: 166 SYFCPKFLSPVVPNYDNVHPNYHKEPFLQQPKVFSDEVQQQAQLSTIRSFLKLYTTMPVA 225

Query: 474 KLAGFLDLTEQEFRIQLLVFKHKMKNLVWTSGISALDGEFQSASEVDFYIDKDMIHIADT 533
           KLAGFLDLTEQEFRIQL VFKHK+KNLVWTS I+ LD EFQSASEVDFYIDKDMIHI DT
Sbjct: 226 KLAGFLDLTEQEFRIQLPVFKHKLKNLVWTSSITTLDDEFQSASEVDFYIDKDMIHIMDT 285

Query: 534 KVARRYGDFFIRQIHKFEELNRTLKKMGQRP 564
           KVARRYG+FFIRQIH+FEELNRTLKKMGQRP
Sbjct: 286 KVARRYGNFFIRQIHRFEELNRTLKKMGQRP 316


>gi|5454038 synaptonemal complex protein SC65 [Homo sapiens]
          Length = 437

 Score = 36.2 bits (82), Expect = 0.082
 Identities = 47/206 (22%), Positives = 80/206 (38%), Gaps = 31/206 (15%)

Query: 179 PNQWLWDIIDEFIYQFQSFSQYRCKTAKKS-EEEIDFLRSNPKIWNVHSVLNVLHSLVDK 237
           P Q L D      YQ+  ++ ++    +K+      FL+ NPK       LN    ++D 
Sbjct: 132 PRQLLRDFQSRLPYQYLHYALFKANRLEKAVAAAYTFLQRNPKHELTAKYLNYYQGMLDV 191

Query: 238 SNIN--------------RQLEVYTSGGDPESVAGEYGRHSLYKMLGYFS--LVGLLRLH 281
           ++ +              R +++Y SG    S   E    +L + L  F+  L G    H
Sbjct: 192 ADESLTDLEAQPYEAVFLRAVKLYNSGDFRSST--EDMERALSEYLAVFARCLAGCEGAH 249

Query: 282 SLLG--DYYQAIKVL--ENIELNKKSMYSRVPECQ--------VTTYYYVGFAYLMMRRY 329
             +   D+Y AI  L  E+++       +  P            T Y+Y+ FAY  +   
Sbjct: 250 EQVDFKDFYPAIADLFAESLQCKVDCEANLTPNVGGYFVDKFVATMYHYLQFAYYKLNDV 309

Query: 330 QDAIRVFANILLYIQRTKSMFQRTTY 355
           + A R  A+ +L+  +   M Q   Y
Sbjct: 310 RQAARSAASYMLFDPKDSVMQQNLVY 335


>gi|126012497 dynein, axonemal, heavy polypeptide 8 [Homo sapiens]
          Length = 4490

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 5/92 (5%)

Query: 394  YGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLK-VFSDEVQ 452
            YGD     +K  P  Y    + S P++ S +VPN DN+  N+  +   +Q K V     Q
Sbjct: 2402 YGDWEHWNKKLQPYYYP---TDSIPEYSSILVPNVDNIRTNFLIDTIAKQHKAVLLTGEQ 2458

Query: 453  QQAQLSTIRSFLKLY-TTMPVAKLAGFLDLTE 483
              A+   ++++LK Y   + ++K   F   TE
Sbjct: 2459 GTAKTVMVKAYLKKYDPEVQLSKSLNFSSATE 2490


>gi|25952122 Bardet-Biedl syndrome 4 [Homo sapiens]
          Length = 519

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 43/162 (26%), Positives = 59/162 (36%), Gaps = 34/162 (20%)

Query: 218 NPKIWNVHSVLNVLHSLVDKSNINRQLEVYTSGGDPESVAGEYGRHSL-YKMLGYFSLVG 276
           N K W +   L V +           L+ +    D    A    RH L Y MLG      
Sbjct: 131 NQKDWEISHNLGVCYIY---------LKQFNKAQDQLHNALNLNRHDLTYIMLG------ 175

Query: 277 LLRLHSLLGDYYQAIKVLENIELNKKSMYSRVPECQVTTYYYVGFAYLMMRRYQDAIRVF 336
             ++H L GD  +AI+V       KK++       ++ T   +G  YL +  YQ A    
Sbjct: 176 --KIHLLEGDLDKAIEVY------KKAVEFSPENTELLTT--LGLLYLQLGIYQKAFEHL 225

Query: 337 ANILLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMY 378
            N L Y          T YK  +      Q H    +ALT Y
Sbjct: 226 GNALTY--------DPTNYKAILAAGSMMQTHGDFDVALTKY 259


>gi|198442844 dynein, axonemal, heavy chain 10 [Homo sapiens]
          Length = 4471

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/67 (20%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 394  YGDKMLRMQKGDPQVYEELFSYSCPKFLSPVVPNYDNVHPNYHKEPFLQQLKVFSDEVQQ 453
            +GD  + + +G+P++YE++  Y   K L      +  +   Y++      L +F D ++ 
Sbjct: 2731 FGDFQMALHEGEPRIYEDIQDYEAAKAL------FQEILEEYNESNTKMNLVLFDDALEH 2784

Query: 454  QAQLSTI 460
              ++  I
Sbjct: 2785 LTRVHRI 2791


>gi|207113149 haloacid dehalogenase-like hydrolase domain containing
           1A isoform a [Homo sapiens]
          Length = 251

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 13/148 (8%)

Query: 27  TGDPKQDLAYERQYEQQTYQVI-PEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVID 85
           +G+  + L       ++ Y V+  E+   + + +   V  L+  K   L+A+++  DV+ 
Sbjct: 31  SGESSRGLQSRWTDTERLYSVVFQEICNRYDKKYSWDVKSLVMGKK-ALEAAQIIIDVLQ 89

Query: 86  QKVYEIQDIYENSWTKLTERFFKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVS 145
             + + +++ E S TKL E F      P AE +   +    +   L          A  S
Sbjct: 90  LPMSK-EELVEESQTKLKEVFPTAALMPGAEKLIIHLRKHGIPFAL----------ATSS 138

Query: 146 GGPSLEQRFESYYNYCNLFNYILNADGP 173
           G  S + +   +  + +LF++I+  D P
Sbjct: 139 GSASFDMKTSRHKEFFSLFSHIVLGDDP 166


>gi|197382691 haloacid dehalogenase-like hydrolase domain containing
           1A isoform b [Homo sapiens]
          Length = 228

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 47  VIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYENSWTKLTERF 106
           V  E+   + + +   V  L+  K   L+A+++  DV+   + + +++ E S TKL E F
Sbjct: 29  VFQEICNRYDKKYSWDVKSLVMGKK-ALEAAQIIIDVLQLPMSK-EELVEESQTKLKEVF 86

Query: 107 FKNTPWPEAEAIAPQVGNDAVFLILYKELYYRHIYAKVSGGPSLEQRFESYYNYCNLFNY 166
                 P AE +   +    +   L          A  SG  S + +   +  + +LF++
Sbjct: 87  PTAALMPGAEKLIIHLRKHGIPFAL----------ATSSGSASFDMKTSRHKEFFSLFSH 136

Query: 167 ILNADGP 173
           I+  D P
Sbjct: 137 IVLGDDP 143


>gi|156139127 hypothetical protein LOC80007 [Homo sapiens]
          Length = 445

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 41  EQQTYQVIPEVIKNFIQYFHKTVSDLIDQKVYELQASRVSSDVIDQKVYEIQDIYEN 97
           EQ     + +++   ++   K + D IDQ+++ELQ      + ID K+  + D+ +N
Sbjct: 371 EQSICSYLEKILSKNMELMEKKLMDYIDQRIHELQ------EHIDDKIALLLDLLQN 421


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 2   SYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYE-----QQTYQVIPEVIKNFI 56
           SY   DY  + +YD     S YD H G   +   Y++Q++     QQ+Y    E      
Sbjct: 101 SYDQPDYGQQDSYDQQ---SGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRE------ 151

Query: 57  QYFHKTVSDLIDQKVY 72
            Y H T  D  D   Y
Sbjct: 152 NYSHHTQDDRRDVSRY 167


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 14/76 (18%)

Query: 2   SYPADDYESEAAYDPYAYPSDYDMHTGDPKQDLAYERQYE-----QQTYQVIPEVIKNFI 56
           SY   DY  + +YD     S YD H G   +   Y++Q++     QQ+Y    E      
Sbjct: 104 SYDQPDYGQQDSYDQQ---SGYDQHQGSYDEQSNYDQQHDSYSQNQQSYHSQRE------ 154

Query: 57  QYFHKTVSDLIDQKVY 72
            Y H T  D  D   Y
Sbjct: 155 NYSHHTQDDRRDVSRY 170


>gi|157952215 protein tyrosine phosphatase, receptor type, B isoform a
            [Homo sapiens]
          Length = 2215

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 422  SPVVPNYDNVHPNYHKEP 439
            +P+ P Y+NV+P YH++P
Sbjct: 2193 NPLFPIYENVNPEYHRDP 2210


>gi|157952213 protein tyrosine phosphatase, receptor type, B isoform b
            precursor [Homo sapiens]
          Length = 1997

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)

Query: 422  SPVVPNYDNVHPNYHKEP 439
            +P+ P Y+NV+P YH++P
Sbjct: 1975 NPLFPIYENVNPEYHRDP 1992


>gi|33589818 prolyl 4-hydroxylase, alpha III subunit precursor [Homo
           sapiens]
          Length = 544

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 36/207 (17%)

Query: 284 LGDYYQAIKVLEN-IELNKKSMYSRVPECQVT---TYYYVGFAYLMMRRYQDAIRVFANI 339
           +GDYY AI  LE  + L + S      E + +      ++ FAY        A+ +    
Sbjct: 194 MGDYYHAIPWLEEAVSLFRGSYGEWKTEDEASLEDALDHLAFAYFRAGNVSCALSLSREF 253

Query: 340 LLYIQRTKSMFQRTTYKYEMINKQNEQMHALLAIALTMYPMRIDESIHLQLREKYGDKML 399
           LLY    K M  R   KYE +    E  + ++A A+   P       HLQ R+ Y + + 
Sbjct: 254 LLYSPDNKRM-ARNVLKYERL--LAESPNHVVAEAVIQRP----NIPHLQTRDTY-EGLC 305

Query: 400 RMQKGDPQVYEELFSY-------SCPKFLSPVVPNYDNVHPN---YH------------- 436
           +     P +Y+    Y       +    L P+     ++ P    YH             
Sbjct: 306 QTLGSQPTLYQIPSLYCSYETNSNAYLLLQPIRKEVIHLEPYIALYHDFVSDSEAQKIRE 365

Query: 437 -KEPFLQQLKVFSDEVQQQAQLSTIRS 462
             EP+LQ+  V S E Q Q +    +S
Sbjct: 366 LAEPWLQRSVVASGEKQLQVEYRISKS 392


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,345,315
Number of Sequences: 37866
Number of extensions: 891414
Number of successful extensions: 2068
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2057
Number of HSP's gapped (non-prelim): 19
length of query: 564
length of database: 18,247,518
effective HSP length: 108
effective length of query: 456
effective length of database: 14,157,990
effective search space: 6456043440
effective search space used: 6456043440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.