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Search of human proteins with 7662647
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|7662647 phosphatidylserine synthase 1 [Homo sapiens]
(473 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|7662647 phosphatidylserine synthase 1 [Homo sapiens] 1003 0.0
gi|13540555 phosphatidylserine synthase 2 [Homo sapiens] 235 6e-62
gi|57165375 glutamate receptor, ionotropic, N-methyl D-aspartate... 31 2.1
gi|57165373 glutamate receptor, ionotropic, N-methyl D-aspartate... 31 2.1
gi|166706877 erythrocyte membrane protein band 4.9 isoform 1 [Ho... 30 4.8
gi|166706885 erythrocyte membrane protein band 4.9 isoform 3 [Ho... 30 4.8
gi|166706883 erythrocyte membrane protein band 4.9 isoform 2 [Ho... 30 4.8
gi|166706881 erythrocyte membrane protein band 4.9 isoform 2 [Ho... 30 4.8
gi|166706879 erythrocyte membrane protein band 4.9 isoform 1 [Ho... 30 4.8
gi|166706875 erythrocyte membrane protein band 4.9 isoform 1 [Ho... 30 4.8
>gi|7662647 phosphatidylserine synthase 1 [Homo sapiens]
Length = 473
Score = 1003 bits (2594), Expect = 0.0
Identities = 473/473 (100%), Positives = 473/473 (100%)
Query: 1 MASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTR 60
MASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTR
Sbjct: 1 MASCVGSRTLSKDDVNYKMHFRMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTR 60
Query: 61 DDSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLF 120
DDSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLF
Sbjct: 61 DDSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLF 120
Query: 121 LNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKA 180
LNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKA
Sbjct: 121 LNFEQVKSLMYWLDPNLRYATREADVMEYAVNCHVITWERIISHFDIFAFGHFWGWAMKA 180
Query: 181 LLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFL 240
LLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFL
Sbjct: 181 LLIRSYGLCWTISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFL 240
Query: 241 EMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLT 300
EMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLT
Sbjct: 241 EMRTYHWASFKDIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLT 300
Query: 301 ELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVI 360
ELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVI
Sbjct: 301 ELNTFFLKHIFVFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQCKRVGTQCWVFGVI 360
Query: 361 GFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECE 420
GFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECE
Sbjct: 361 GFLEAIVCIKFGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIWYAEHYGHREKTYSECE 420
Query: 421 DGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRNRHSKSKVTNGVGKK 473
DGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRNRHSKSKVTNGVGKK
Sbjct: 421 DGTYSPEISWHHRKGTKGSEDSPPKHAGNNESHSSRRRNRHSKSKVTNGVGKK 473
>gi|13540555 phosphatidylserine synthase 2 [Homo sapiens]
Length = 487
Score = 235 bits (600), Expect = 6e-62
Identities = 134/394 (34%), Positives = 200/394 (50%), Gaps = 20/394 (5%)
Query: 22 RMINEQQVEDITIDFFYRPHTITLLSFTIVSLMYFAFTRDDSVPED---NIWRGILSVIF 78
R + +D T FF+R HT+T+L +L Y + P+D N RGI++ I
Sbjct: 45 RSTESEVYDDGTNTFFWRAHTLTVLFILTCTLGYVTLLEE--TPQDTAYNTKRGIVASIL 102
Query: 79 FFLIISVLAFPNGPFTRPHPALWRMVFGLSVLYFLFLVFLLFLNFEQVKSLMYWLDPNLR 138
FL V +GPF+RPHPA WR +SV+Y LFL+F+LF + + + ++DP L
Sbjct: 103 VFLCFGVTQAKDGPFSRPHPAYWRFWLCVSVVYELFLIFILFQTVQDGRQFLKYVDPKLG 162
Query: 139 YATREADVMEYAVNCHVIT-------WERIISHFDIFAFGHFWGWAMKALLIRSYGLCWT 191
E D Y NC + + I D F HF GW +K L+IR + +C
Sbjct: 163 VPLPERD---YGGNCLIYDPDNETDPFHNIWDKLDGFVPAHFLGWYLKTLMIRDWWMCMI 219
Query: 192 ISITWELTELFFMHLLPNFAECWWDQVILDILLCNGGGIWLGMVVCRFLEMRTYHWASFK 251
IS+ +E E H LPNF+ECWWD I+D+L+CNG GI+ GM +L ++TY W
Sbjct: 220 ISVMFEFLEYSLEHQLPNFSECWWDHWIMDVLVCNGLGIYCGMKTLEWLSLKTYKWQGLW 279
Query: 252 DIHTTTGKIKRAVLQFTPASWTYVRWFDPKSSFQRVAGVYLFMIIWQLTELNTFFLKHIF 311
+I T GK+KR QFTP SW W P SS +R V ++++ L ELNTF+LK +
Sbjct: 280 NIPTYKGKMKRIAFQFTPYSWVRFEW-KPASSLRRWLAVCGIILVFLLAELNTFYLKFVL 338
Query: 312 VFQASHPLSWGRILFIGGITAPTVRQYYAYLTDTQ-CKRVGTQCWVFGVIGFLEAIVCIK 370
H L R++F + +R+ Y ++ D + K++G Q W+ I E ++ +K
Sbjct: 339 WMPPEHYLVLLRLVFFVNVGGVAMREIYDFMDDPKPHKKLGPQAWLVAAITATELLIVVK 398
Query: 371 FGQDLFSKTQILYVVLWLLCVAFTTFLCLYGMIW 404
+ + + Y+ C + L L +W
Sbjct: 399 YDPHTLTLSLPFYI---SQCWTLGSVLALTWTVW 429
>gi|57165375 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 31.2 bits (69), Expect = 2.1
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 46 LSFTIVSLMYFAFTRD-DSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMV 104
LS T+ ++ F F + +N+W +S FF+ + VL+ G F R HP W +V
Sbjct: 173 LSVTLSTVSVFTFVAEVKGFVRENVWTYYVSYAVFFISLIVLSC-CGDFRRKHP--WNLV 229
Query: 105 FGLSVL 110
LSVL
Sbjct: 230 -ALSVL 234
>gi|57165373 glutamate receptor, ionotropic, N-methyl
D-aspartate-associated protein 1 [Homo sapiens]
Length = 371
Score = 31.2 bits (69), Expect = 2.1
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 46 LSFTIVSLMYFAFTRD-DSVPEDNIWRGILSVIFFFLIISVLAFPNGPFTRPHPALWRMV 104
LS T+ ++ F F + +N+W +S FF+ + VL+ G F R HP W +V
Sbjct: 173 LSVTLSTVSVFTFVAEVKGFVRENVWTYYVSYAVFFISLIVLSC-CGDFRRKHP--WNLV 229
Query: 105 FGLSVL 110
LSVL
Sbjct: 230 -ALSVL 234
>gi|166706877 erythrocyte membrane protein band 4.9 isoform 1 [Homo
sapiens]
Length = 405
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 413 EKTYSECEDGTYSPEISWHHRKGTK-GSEDSPPKHAGNN--ESHSSRRRNRHSKSKVTNG 469
E Y C E W RK ++ G+E+ + ++ E + R R R SKVT+
Sbjct: 188 ETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSN 247
Query: 470 VGK 472
+GK
Sbjct: 248 LGK 250
>gi|166706885 erythrocyte membrane protein band 4.9 isoform 3 [Homo
sapiens]
Length = 358
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 413 EKTYSECEDGTYSPEISWHHRKGTK-GSEDSPPKHAGNN--ESHSSRRRNRHSKSKVTNG 469
E Y C E W RK ++ G+E+ + ++ E + R R R SKVT+
Sbjct: 163 ETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSN 222
Query: 470 VGK 472
+GK
Sbjct: 223 LGK 225
>gi|166706883 erythrocyte membrane protein band 4.9 isoform 2 [Homo
sapiens]
Length = 383
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 413 EKTYSECEDGTYSPEISWHHRKGTK-GSEDSPPKHAGNN--ESHSSRRRNRHSKSKVTNG 469
E Y C E W RK ++ G+E+ + ++ E + R R R SKVT+
Sbjct: 188 ETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSN 247
Query: 470 VGK 472
+GK
Sbjct: 248 LGK 250
>gi|166706881 erythrocyte membrane protein band 4.9 isoform 2 [Homo
sapiens]
Length = 383
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 413 EKTYSECEDGTYSPEISWHHRKGTK-GSEDSPPKHAGNN--ESHSSRRRNRHSKSKVTNG 469
E Y C E W RK ++ G+E+ + ++ E + R R R SKVT+
Sbjct: 188 ETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSN 247
Query: 470 VGK 472
+GK
Sbjct: 248 LGK 250
>gi|166706879 erythrocyte membrane protein band 4.9 isoform 1 [Homo
sapiens]
Length = 405
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 413 EKTYSECEDGTYSPEISWHHRKGTK-GSEDSPPKHAGNN--ESHSSRRRNRHSKSKVTNG 469
E Y C E W RK ++ G+E+ + ++ E + R R R SKVT+
Sbjct: 188 ETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSN 247
Query: 470 VGK 472
+GK
Sbjct: 248 LGK 250
>gi|166706875 erythrocyte membrane protein band 4.9 isoform 1 [Homo
sapiens]
Length = 405
Score = 30.0 bits (66), Expect = 4.8
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 413 EKTYSECEDGTYSPEISWHHRKGTK-GSEDSPPKHAGNN--ESHSSRRRNRHSKSKVTNG 469
E Y C E W RK ++ G+E+ + ++ E + R R R SKVT+
Sbjct: 188 ETDYWPCPPSLAVVETEWRKRKASRRGAEEEEEEEDDDSGEEMKALRERQREELSKVTSN 247
Query: 470 VGK 472
+GK
Sbjct: 248 LGK 250
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.142 0.483
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,490,152
Number of Sequences: 37866
Number of extensions: 820198
Number of successful extensions: 2361
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2355
Number of HSP's gapped (non-prelim): 10
length of query: 473
length of database: 18,247,518
effective HSP length: 106
effective length of query: 367
effective length of database: 14,233,722
effective search space: 5223775974
effective search space used: 5223775974
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.