Search of human proteins with 74275348

Search of human proteins with 74275348

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo
sapiens]
         (186 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo s...   382   e-106
gi|74275346 adenosylmethionine decarboxylase 1 isoform 1 precurs...   382   e-106
gi|169167822 PREDICTED: similar to hCG17429 [Homo sapiens]            189   1e-48
gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens]            189   1e-48
gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens]            189   1e-48
gi|21687001 DNA-damage-inducible transcript 4-like [Homo sapiens]      31   0.54 

>gi|74275348 adenosylmethionine decarboxylase 1 isoform 2 [Homo
           sapiens]
          Length = 186

 Score =  382 bits (981), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 60
           MGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG
Sbjct: 1   MGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 60

Query: 61  IRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLI 120
           IRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLI
Sbjct: 61  IRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLI 120

Query: 121 RKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK 180
           RKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK
Sbjct: 121 RKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK 180

Query: 181 QQQQQS 186
           QQQQQS
Sbjct: 181 QQQQQS 186


>gi|74275346 adenosylmethionine decarboxylase 1 isoform 1 precursor
           [Homo sapiens]
          Length = 334

 Score =  382 bits (981), Expect = e-106
 Identities = 186/186 (100%), Positives = 186/186 (100%)

Query: 1   MGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 60
           MGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG
Sbjct: 149 MGRMNSDCWYLYTLDFPESRVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESG 208

Query: 61  IRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLI 120
           IRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLI
Sbjct: 209 IRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLI 268

Query: 121 RKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK 180
           RKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK
Sbjct: 269 RKVVEVFKPGKFVTTLFVNQSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKK 328

Query: 181 QQQQQS 186
           QQQQQS
Sbjct: 329 QQQQQS 334


>gi|169167822 PREDICTED: similar to hCG17429 [Homo sapiens]
          Length = 353

 Score =  189 bits (480), Expect = 1e-48
 Identities = 104/163 (63%), Positives = 107/163 (65%), Gaps = 48/163 (29%)

Query: 20  RVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG 79
           +VISQPDQTLE LMS LDPAVMDQFYMKDGVTAKDV  ESGI +LIPGSVI+ATMFNP G
Sbjct: 239 KVISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYG 298

Query: 80  YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVN 139
           YSMNGMKSDGTYWTIHITPEPE  Y                                   
Sbjct: 299 YSMNGMKSDGTYWTIHITPEPESFY----------------------------------- 323

Query: 140 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 182
                        KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 324 -------------KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353


>gi|169167904 PREDICTED: similar to hCG17429 [Homo sapiens]
          Length = 353

 Score =  189 bits (480), Expect = 1e-48
 Identities = 104/163 (63%), Positives = 107/163 (65%), Gaps = 48/163 (29%)

Query: 20  RVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG 79
           +VISQPDQTLE LMS LDPAVMDQFYMKDGVTAKDV  ESGI +LIPGSVI+ATMFNP G
Sbjct: 239 KVISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYG 298

Query: 80  YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVN 139
           YSMNGMKSDGTYWTIHITPEPE  Y                                   
Sbjct: 299 YSMNGMKSDGTYWTIHITPEPESFY----------------------------------- 323

Query: 140 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 182
                        KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 324 -------------KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353


>gi|239742531 PREDICTED: similar to hCG17429 [Homo sapiens]
          Length = 353

 Score =  189 bits (480), Expect = 1e-48
 Identities = 104/163 (63%), Positives = 107/163 (65%), Gaps = 48/163 (29%)

Query: 20  RVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCG 79
           +VISQPDQTLE LMS LDPAVMDQFYMKDGVTAKDV  ESGI +LIPGSVI+ATMFNP G
Sbjct: 239 KVISQPDQTLENLMSGLDPAVMDQFYMKDGVTAKDVICESGIHNLIPGSVINATMFNPYG 298

Query: 80  YSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVN 139
           YSMNGMKSDGTYWTIHITPEPE  Y                                   
Sbjct: 299 YSMNGMKSDGTYWTIHITPEPESFY----------------------------------- 323

Query: 140 QSSKCRTVLASPQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 182
                        KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ
Sbjct: 324 -------------KIEGFKRLDCQSAMFNDYNFVFTSFAKKQQ 353


>gi|21687001 DNA-damage-inducible transcript 4-like [Homo sapiens]
          Length = 193

 Score = 31.2 bits (69), Expect = 0.54
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 78  CGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNLSQ 113
           CGY    + SD  YW  ++ PEP  + V FE +  Q
Sbjct: 21  CGYHPESLLSDFDYWD-YVVPEPNLNEVIFEESTCQ 55


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,623,216
Number of Sequences: 37866
Number of extensions: 258660
Number of successful extensions: 421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 9
length of query: 186
length of database: 18,247,518
effective HSP length: 96
effective length of query: 90
effective length of database: 14,612,382
effective search space: 1315114380
effective search space used: 1315114380
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.