Search of human proteins with 6996016

Search of human proteins with 6996016

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6996016 lymphotoxin-beta isoform b [Homo sapiens]
         (77 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6996016 lymphotoxin-beta isoform b [Homo sapiens]                  148   1e-36
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]                  104   1e-23
gi|6912430 isoprenylcysteine carboxyl methyltransferase [Homo sa...    28   2.1  
gi|7661690 coiled-coil domain containing 9 [Homo sapiens]              26   6.0  
gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]        26   7.9  
gi|148806894 hypothetical protein LOC26175 isoform 1 [Homo sapiens]    26   7.9  
gi|148806869 hypothetical protein LOC26175 isoform 2 [Homo sapiens]    26   7.9  

>gi|6996016 lymphotoxin-beta isoform b [Homo sapiens]
          Length = 77

 Score =  148 bits (373), Expect = 1e-36
 Identities = 77/77 (100%), Positives = 77/77 (100%)

Query: 1  MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ 60
          MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ
Sbjct: 1  MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ 60

Query: 61 RRSQKQISAPGSQLPTS 77
          RRSQKQISAPGSQLPTS
Sbjct: 61 RRSQKQISAPGSQLPTS 77


>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
          Length = 244

 Score =  104 bits (260), Expect = 1e-23
 Identities = 58/75 (77%), Positives = 61/75 (81%)

Query: 1  MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQ 60
          MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGL   +  
Sbjct: 1  MGALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLALVPQDQGGLVTETAD 60

Query: 61 RRSQKQISAPGSQLP 75
            +Q Q      +LP
Sbjct: 61 PGAQAQQGLGFQKLP 75


>gi|6912430 isoprenylcysteine carboxyl methyltransferase [Homo
          sapiens]
          Length = 284

 Score = 27.7 bits (60), Expect = 2.1
 Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 3  ALGLEGRGGRLQGRGSLLLAVAGATSLVTLLLAVPITVLAVLA 45
          AL L  R G LQGR  L L VAG  +L+ LL   P   +A+ A
Sbjct: 29 ALPLLTRAG-LQGRTGLALYVAGLNALLLLLYRPPRYQIAIRA 70


>gi|7661690 coiled-coil domain containing 9 [Homo sapiens]
          Length = 531

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 5   GLEGRGGRLQGRGSLLLAVAGATSL 29
           G  GRG R +GRGS  L+ AG TS+
Sbjct: 124 GAGGRGRRGRGRGSPHLSGAGDTSI 148


>gi|4506191 proteasome beta 10 subunit proprotein [Homo sapiens]
          Length = 273

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 49 QDQGGLGFRSCQRRSQKQISAPGSQLP 75
          + +GG  F +CQR +  +   PG ++P
Sbjct: 7  EPRGGFSFENCQRNASLERVLPGLKVP 33


>gi|148806894 hypothetical protein LOC26175 isoform 1 [Homo sapiens]
          Length = 169

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 28  SLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQRRSQKQI 67
           SL   LL++P  V  V+ LVP  Q  L   SC R   K +
Sbjct: 96  SLKAQLLSLPFWVWTVIFLVPYLQMFLFLYSCTRADPKTV 135


>gi|148806869 hypothetical protein LOC26175 isoform 2 [Homo
          sapiens]
          Length = 131

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 28 SLVTLLLAVPITVLAVLALVPQDQGGLGFRSCQRRSQKQI 67
          SL   LL++P  V  V+ LVP  Q  L   SC R   K +
Sbjct: 58 SLKAQLLSLPFWVWTVIFLVPYLQMFLFLYSCTRADPKTV 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,859,810
Number of Sequences: 37866
Number of extensions: 96164
Number of successful extensions: 279
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 272
Number of HSP's gapped (non-prelim): 7
length of query: 77
length of database: 18,247,518
effective HSP length: 49
effective length of query: 28
effective length of database: 16,392,084
effective search space: 458978352
effective search space used: 458978352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.