Search of human proteins with 13899263

Search of human proteins with 13899263

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13899263 transmembrane protein 7 [Homo sapiens]
         (232 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13899263 transmembrane protein 7 [Homo sapiens]                    494   e-140
gi|54607029 28kD interferon responsive protein [Homo sapiens]         171   5e-43
gi|51972198 receptor transporting protein 2 [Homo sapiens]            111   5e-25
gi|114687645 receptor transporting protein 1 [Homo sapiens]           105   4e-23
gi|134288863 hypothetical protein LOC285093 [Homo sapiens]             92   5e-19
gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]              29   3.0  

>gi|13899263 transmembrane protein 7 [Homo sapiens]
          Length = 232

 Score =  494 bits (1271), Expect = e-140
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR 60
           MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR
Sbjct: 1   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR 60

Query: 61  NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF 120
           NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF
Sbjct: 61  NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF 120

Query: 121 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH 180
           RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH
Sbjct: 121 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQTPRVH 180

Query: 181 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI 232
           SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI
Sbjct: 181 SIYKVEEVVKPWASGENVYSYACQNHICRNLSIFCCCVILIVIVVIVVKTAI 232


>gi|54607029 28kD interferon responsive protein [Homo sapiens]
          Length = 246

 Score =  171 bits (433), Expect = 5e-43
 Identities = 94/241 (39%), Positives = 132/241 (54%), Gaps = 12/241 (4%)

Query: 1   MAGDTEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSR 60
           M  D   W+Q FQEL++E KP   WTL+ D  L  + L  GW QYQQ  F  F+CSSC R
Sbjct: 1   MVVDFWTWEQTFQELIQEAKPRATWTLKLDGNLQLDCLAQGWKQYQQRAFGWFRCSSCQR 60

Query: 61  NWASAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVF 120
           +WASAQV +L H  W    S+GQV+MR+F QRC+KC    +E PEF+ ++  RIL NLV 
Sbjct: 61  SWASAQVQILCHTYWEHWTSQGQVRMRLFGQRCQKCSWSQYEMPEFSSDSTMRILSNLVQ 120

Query: 121 RILKKCYRGRFQLIEEVPMIKDISLEGPHNSDNCEACLQGFCAGPIQVTSLPPSQ----- 175
            ILKK Y    +   E+P+I ++SLEG H++ NCEAC  G C   ++     PS+     
Sbjct: 121 HILKKYYGNGTRKSPEMPVILEVSLEGSHDTANCEACTLGICGQGLKSCMTKPSKSLLPH 180

Query: 176 ------TPRVHSIYKVEEVVKPWASGENVYSYACQN-HICRNLSIFCCCVILIVIVVIVV 228
                 +P + ++Y   +     A  +       +     R+      CV ++++V IVV
Sbjct: 181 LKTGNSSPGIGAVYLANQAKNQSAEAKEAKGSGYEKLGPSRDPDPLNICVFILLLVFIVV 240

Query: 229 K 229
           K
Sbjct: 241 K 241


>gi|51972198 receptor transporting protein 2 [Homo sapiens]
          Length = 225

 Score =  111 bits (278), Expect = 5e-25
 Identities = 59/157 (37%), Positives = 84/157 (53%), Gaps = 9/157 (5%)

Query: 8   WKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQY-QQWTFARFQCSSCSRNWASAQ 66
           WK++F E M   KP   W L  D  L P+ L PGW QY +Q    RF CS C   W SA 
Sbjct: 10  WKKVFYEKMEVAKPADSWELIIDPNLKPSELAPGWKQYLEQHASGRFHCSWCWHTWQSAH 69

Query: 67  VLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVFRILKKC 126
           V++LFHM     +  G V+MRVF Q C +C     ++    +ENI  ++ NL+  + ++C
Sbjct: 70  VVILFHMFLDRARRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLREQC 129

Query: 127 YR---GRFQLIEEVPMIKDISLEGPHNSDNCEACLQG 160
           Y    G++++   V    D    GPH ++ CEAC +G
Sbjct: 130 YEEDGGQYRI--HVASRPD---SGPHRAEFCEACQEG 161


>gi|114687645 receptor transporting protein 1 [Homo sapiens]
          Length = 263

 Score =  105 bits (261), Expect = 4e-23
 Identities = 59/158 (37%), Positives = 80/158 (50%), Gaps = 5/158 (3%)

Query: 5   TEVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQW-TFARFQCSSCSRNWA 63
           T+ WK++F E M E KP   W L  D  L  NVL PGW QY +     RF CS C   W 
Sbjct: 43  TDEWKKVFYEKMEEAKPADSWDLIIDPNLKHNVLSPGWKQYLELHASGRFHCSWCWHTWQ 102

Query: 64  SAQVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVFRIL 123
           S  V++LFHM     +  G V+MRVF Q C +C     ++    +ENI  ++ NL+  + 
Sbjct: 103 SPYVVILFHMFLDRAQRAGSVRMRVFKQLCYECGTARLDESSMLEENIEGLVDNLITSLR 162

Query: 124 KKCYRGR-FQLIEEVPMIKDISLEGPHNSDNCEACLQG 160
           ++CY  R  Q    V   +D      H  + CEAC +G
Sbjct: 163 EQCYGERGGQYRIHVASRQD---NRRHRGEFCEACQEG 197


>gi|134288863 hypothetical protein LOC285093 [Homo sapiens]
          Length = 572

 Score = 91.7 bits (226), Expect = 5e-19
 Identities = 48/122 (39%), Positives = 60/122 (49%), Gaps = 2/122 (1%)

Query: 6   EVWKQMFQELMREVKPWHRWTLRPDKGLLPNVLKPGWMQYQQWTFARFQCSSCSRNWASA 65
           ++W   F   M E KP   W L P+  L+P  L  G +QY     +R QC  C   W SA
Sbjct: 7   DMWASTFTLAMAERKPQDVWVLLPEHSLVPGCLDGGGVQYLLVGLSRLQCGHCPGTWDSA 66

Query: 66  QVLVLFHMNWSEEKSRGQVKMRVFTQRCKKCPQPLFEDPEFTQENISRILKNLVFRILKK 125
            V VLFH+ W     RG VKMR++ QRC+ CP P   D +         L  LV  IL+ 
Sbjct: 67  HVHVLFHLWWDRASHRGLVKMRIWGQRCRLCPAP--GDCQVRPPGEQPFLSRLVLHILQD 124

Query: 126 CY 127
           CY
Sbjct: 125 CY 126


>gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]
          Length = 2694

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 27/96 (28%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 134 IEEVPMIKDISLEGPHNSD-NCEACLQGFCAGPIQVTSLPPSQTPRVHSIYKV-EEVVKP 191
           IE+  +I  +   G  +S+  C   L+G     I      P Q P+V ++Y      + P
Sbjct: 756 IEKSKLITKLISAGTQDSEWGCPTSLEGQLGSVI--IFYEPLQPPQVKALYLAGPNCLSP 813

Query: 192 WASGE--------NVYSY----ACQNHICRNLSIFC 215
           W   E        N+  Y    AC+N IC +LS  C
Sbjct: 814 WKCQESDMADLPGNILLYYTAKACKNSICLDLSTNC 849


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.137    0.458 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,933,117
Number of Sequences: 37866
Number of extensions: 459375
Number of successful extensions: 1610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1599
Number of HSP's gapped (non-prelim): 7
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.