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Search of human proteins with 67782309
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|67782309 manganese superoxide dismutase isoform B precursor
[Homo sapiens]
(183 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67782309 manganese superoxide dismutase isoform B precursor [... 385 e-108
gi|67782307 manganese superoxide dismutase isoform A precursor [... 366 e-102
gi|67782305 manganese superoxide dismutase isoform A precursor [... 366 e-102
gi|144446030 lymphocyte antigen 75 [Homo sapiens] 30 0.89
gi|150418009 transforming, acidic coiled-coil containing protein... 30 1.5
gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens] 29 2.0
gi|134288902 aminoglycoside phosphotransferase domain containing... 28 5.7
gi|134288871 aminoglycoside phosphotransferase domain containing... 28 5.7
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 27 9.8
gi|41872403 flavin adenine dinucleotide synthetase isoform 2 [Ho... 27 9.8
gi|41872389 flavin adenine dinucleotide synthetase isoform 1 [Ho... 27 9.8
>gi|67782309 manganese superoxide dismutase isoform B precursor
[Homo sapiens]
Length = 183
Score = 385 bits (990), Expect = e-108
Identities = 183/183 (100%), Positives = 183/183 (100%)
Query: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 61 NLNVTEEKYQEALAKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHL 120
NLNVTEEKYQEALAKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHL
Sbjct: 61 NLNVTEEKYQEALAKGELLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHL 120
Query: 121 QIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMA 180
QIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMA
Sbjct: 121 QIAACPNQDPLQGTTGLIPLLGIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMA 180
Query: 181 CKK 183
CKK
Sbjct: 181 CKK 183
>gi|67782307 manganese superoxide dismutase isoform A precursor
[Homo sapiens]
Length = 222
Score = 366 bits (940), Expect = e-102
Identities = 183/222 (82%), Positives = 183/222 (82%), Gaps = 39/222 (17%)
Query: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 61 NLNVTEEKYQEALAKG---------------------------------------ELLEA 81
NLNVTEEKYQEALAKG ELLEA
Sbjct: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 82 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 141
IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
Query: 142 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 183
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
>gi|67782305 manganese superoxide dismutase isoform A precursor
[Homo sapiens]
Length = 222
Score = 366 bits (940), Expect = e-102
Identities = 183/222 (82%), Positives = 183/222 (82%), Gaps = 39/222 (17%)
Query: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 61 NLNVTEEKYQEALAKG---------------------------------------ELLEA 81
NLNVTEEKYQEALAKG ELLEA
Sbjct: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 82 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 141
IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
Query: 142 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 183
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
>gi|144446030 lymphocyte antigen 75 [Homo sapiens]
Length = 1722
Score = 30.4 bits (67), Expect = 0.89
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 18 GYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGE 77
G LG + PD P G + ++ H++ V + ++EA +
Sbjct: 628 GPLGPEEASPKPDDPCPEGWQSFPASLSCYKVFHAERI--------VRKRNWEEAERFCQ 679
Query: 78 LLEAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQ 121
L A F D+ KE L + G W W+G NK LQ
Sbjct: 680 ALGAHLSSFSHVDEIKEFLHFLTDQFSGQHWLWIGLNKRSPDLQ 723
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 29.6 bits (65), Expect = 1.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 97 TAASVGVQGSGWGWLG--FNKERGHLQIAACPNQDPLQGTTG 136
TA G + SG G G + G ++ P+QDP QGT+G
Sbjct: 1349 TAPGAGAKASGEGMAGDAAGETEGSMERMGEPSQDPKQGTSG 1390
>gi|119964721 fer (fps/fes related) tyrosine kinase [Homo sapiens]
Length = 822
Score = 29.3 bits (64), Expect = 2.0
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 59 VNNLNVTEEKYQEALAKGELLEAIKRDFGSFDKFKEKL 96
+ +N +EKY+EALAKG+ E K +DK KL
Sbjct: 144 IKEMNSAKEKYKEALAKGKETEKAKE---RYDKATMKL 178
>gi|134288902 aminoglycoside phosphotransferase domain containing 1
isoform 2 [Homo sapiens]
Length = 220
Score = 27.7 bits (60), Expect = 5.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 13 LAPVLGYLGSRQKHSLPDLP---YDYGALEPHINAQIMQLHHSK----HHAAYVNNLNVT 65
L +L YL R LP P Y+ G L ++ + + HH K H ++ NL
Sbjct: 122 LVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNV 181
Query: 66 E--EKYQEALAKGELLEAIK 83
EKY AL + E ++
Sbjct: 182 PLLEKYLYALGQNRNREIVE 201
>gi|134288871 aminoglycoside phosphotransferase domain containing 1
isoform 1 [Homo sapiens]
Length = 373
Score = 27.7 bits (60), Expect = 5.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 9/80 (11%)
Query: 13 LAPVLGYLGSRQKHSLPDLP---YDYGALEPHINAQIMQLHHSK----HHAAYVNNLNVT 65
L +L YL R LP P Y+ G L ++ + + HH K H ++ NL
Sbjct: 122 LVRLLTYLPGRPIAELPVSPQLLYEIGKLAAKLDKTLQRFHHPKLSSLHRENFIWNLKNV 181
Query: 66 E--EKYQEALAKGELLEAIK 83
EKY AL + E ++
Sbjct: 182 PLLEKYLYALGQNRNREIVE 201
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 26.9 bits (58), Expect = 9.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 27 SLPDLPYDYGAL--EPHINAQIMQLHHSKHH 55
SLP +P+ G PH+++ M LHH HH
Sbjct: 2190 SLPFMPFVMGGAPSSPHVDSSTM-LHHHHHH 2219
>gi|41872403 flavin adenine dinucleotide synthetase isoform 2 [Homo
sapiens]
Length = 490
Score = 26.9 bits (58), Expect = 9.8
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 80 EAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIP 139
EA+ + FG K KL AA+ + G GW L L DP G P
Sbjct: 92 EAVAQAFGDELKPHPKLEAATKALGGEGWEKLSLVPSSARLHYGT----DPCTGQPFRFP 147
Query: 140 LLGI 143
L+ +
Sbjct: 148 LVSV 151
>gi|41872389 flavin adenine dinucleotide synthetase isoform 1 [Homo
sapiens]
Length = 587
Score = 26.9 bits (58), Expect = 9.8
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 80 EAIKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIP 139
EA+ + FG K KL AA+ + G GW L L DP G P
Sbjct: 189 EAVAQAFGDELKPHPKLEAATKALGGEGWEKLSLVPSSARLHYGT----DPCTGQPFRFP 244
Query: 140 LLGI 143
L+ +
Sbjct: 245 LVSV 248
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,160,669
Number of Sequences: 37866
Number of extensions: 299920
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 718
Number of HSP's gapped (non-prelim): 13
length of query: 183
length of database: 18,247,518
effective HSP length: 96
effective length of query: 87
effective length of database: 14,612,382
effective search space: 1271277234
effective search space used: 1271277234
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.