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Search of human proteins with 67782307
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|67782307 manganese superoxide dismutase isoform A precursor
[Homo sapiens]
(222 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67782307 manganese superoxide dismutase isoform A precursor [... 468 e-132
gi|67782305 manganese superoxide dismutase isoform A precursor [... 468 e-132
gi|67782309 manganese superoxide dismutase isoform B precursor [... 366 e-102
gi|239754273 PREDICTED: hypothetical protein XP_002345938 [Homo ... 32 0.56
gi|239748807 PREDICTED: hypothetical protein XP_002346806 [Homo ... 32 0.56
gi|239742846 PREDICTED: hypothetical protein XP_002342676 [Homo ... 32 0.56
gi|239740902 PREDICTED: hypothetical protein XP_002344080 [Homo ... 32 0.56
gi|239740832 PREDICTED: hypothetical protein XP_002344045 [Homo ... 32 0.56
gi|239740782 PREDICTED: hypothetical protein [Homo sapiens] 32 0.56
gi|239740729 PREDICTED: hypothetical protein [Homo sapiens] 32 0.56
gi|239740679 PREDICTED: hypothetical protein [Homo sapiens] 32 0.56
gi|150418009 transforming, acidic coiled-coil containing protein... 30 2.1
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42... 29 3.7
gi|22748973 protein interacting with cyclin A1 [Homo sapiens] 28 6.2
>gi|67782307 manganese superoxide dismutase isoform A precursor
[Homo sapiens]
Length = 222
Score = 468 bits (1205), Expect = e-132
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
Query: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
>gi|67782305 manganese superoxide dismutase isoform A precursor
[Homo sapiens]
Length = 222
Score = 468 bits (1205), Expect = e-132
Identities = 222/222 (100%), Positives = 222/222 (100%)
Query: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
Query: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
Query: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
>gi|67782309 manganese superoxide dismutase isoform B precursor
[Homo sapiens]
Length = 183
Score = 366 bits (940), Expect = e-102
Identities = 183/222 (82%), Positives = 183/222 (82%), Gaps = 39/222 (17%)
Query: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1 MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
Query: 61 NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
NLNVTEEKYQEALAKG ELLEA
Sbjct: 61 NLNVTEEKYQEALAKG---------------------------------------ELLEA 81
Query: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 82 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 141
Query: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 142 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 183
>gi|239754273 PREDICTED: hypothetical protein XP_002345938 [Homo
sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239748807 PREDICTED: hypothetical protein XP_002346806 [Homo
sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239742846 PREDICTED: hypothetical protein XP_002342676 [Homo
sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239740902 PREDICTED: hypothetical protein XP_002344080 [Homo
sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239740832 PREDICTED: hypothetical protein XP_002344045 [Homo
sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239740782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239740729 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|239740679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 107
Score = 31.6 bits (70), Expect = 0.56
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)
Query: 51 HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
H HH A + LN+ E QEA+ V A + L P + +F +P
Sbjct: 11 HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60
Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
G G + + + G K E S GV G G GWLGF+
Sbjct: 61 GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105
>gi|150418009 transforming, acidic coiled-coil containing protein 2
isoform a [Homo sapiens]
Length = 2948
Score = 29.6 bits (65), Expect = 2.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 136 TAASVGVQGSGWGWLG--FNKERGHLQIAACPNQDPLQGTTG 175
TA G + SG G G + G ++ P+QDP QGT+G
Sbjct: 1349 TAPGAGAKASGEGMAGDAAGETEGSMERMGEPSQDPKQGTSG 1390
>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
precursor [Homo sapiens]
Length = 2012
Score = 28.9 bits (63), Expect = 3.7
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 33 YDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
Y Y +++ + N+ ++ +H + A+ NN + Q+ + +G+ T + +QP L +
Sbjct: 530 YPYYSIKWYKNSNLLPFNHRQ--VAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQ 587
Query: 93 GGHI 96
H+
Sbjct: 588 SVHV 591
>gi|22748973 protein interacting with cyclin A1 [Homo sapiens]
Length = 336
Score = 28.1 bits (61), Expect = 6.2
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 33 YDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQE------ALAKGDVTAQIALQP 86
+ YG + + + +HH +H ++LN EE+ +E G TA L
Sbjct: 115 FRYGWCKSYRPVSVAVIHHPLYHECGADDLNEEEEEEEEESKPPIPTQVGPATASPDLGT 174
Query: 87 ALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEK 134
++ W + SP G KG+ + IK+ +K K+K
Sbjct: 175 SMATGTPDSTAPITIWRSESPTG----KGQGSKVIKKVKKKKEKEKDK 218
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,178,308
Number of Sequences: 37866
Number of extensions: 422225
Number of successful extensions: 885
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 15
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.