Guide to the Human Genome
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Search of human proteins with 67782305

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|67782305 manganese superoxide dismutase isoform A precursor
[Homo sapiens]
         (222 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|67782307 manganese superoxide dismutase isoform A precursor [...   468   e-132
gi|67782305 manganese superoxide dismutase isoform A precursor [...   468   e-132
gi|67782309 manganese superoxide dismutase isoform B precursor [...   366   e-102
gi|239754273 PREDICTED: hypothetical protein XP_002345938 [Homo ...    32   0.56 
gi|239748807 PREDICTED: hypothetical protein XP_002346806 [Homo ...    32   0.56 
gi|239742846 PREDICTED: hypothetical protein XP_002342676 [Homo ...    32   0.56 
gi|239740902 PREDICTED: hypothetical protein XP_002344080 [Homo ...    32   0.56 
gi|239740832 PREDICTED: hypothetical protein XP_002344045 [Homo ...    32   0.56 
gi|239740782 PREDICTED: hypothetical protein [Homo sapiens]            32   0.56 
gi|239740729 PREDICTED: hypothetical protein [Homo sapiens]            32   0.56 
gi|239740679 PREDICTED: hypothetical protein [Homo sapiens]            32   0.56 
gi|150418009 transforming, acidic coiled-coil containing protein...    30   2.1  
gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42...    29   3.7  
gi|22748973 protein interacting with cyclin A1 [Homo sapiens]          28   6.2  

>gi|67782307 manganese superoxide dismutase isoform A precursor
           [Homo sapiens]
          Length = 222

 Score =  468 bits (1205), Expect = e-132
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
           MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1   MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60

Query: 61  NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
           NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61  NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120

Query: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
           IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180

Query: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
           GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222


>gi|67782305 manganese superoxide dismutase isoform A precursor
           [Homo sapiens]
          Length = 222

 Score =  468 bits (1205), Expect = e-132
 Identities = 222/222 (100%), Positives = 222/222 (100%)

Query: 1   MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
           MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1   MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60

Query: 61  NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
           NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA
Sbjct: 61  NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120

Query: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
           IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180

Query: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
           GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222


>gi|67782309 manganese superoxide dismutase isoform B precursor
           [Homo sapiens]
          Length = 183

 Score =  366 bits (940), Expect = e-102
 Identities = 183/222 (82%), Positives = 183/222 (82%), Gaps = 39/222 (17%)

Query: 1   MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60
           MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN
Sbjct: 1   MLSRAVCGTSRQLAPVLGYLGSRQKHSLPDLPYDYGALEPHINAQIMQLHHSKHHAAYVN 60

Query: 61  NLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEA 120
           NLNVTEEKYQEALAKG                                       ELLEA
Sbjct: 61  NLNVTEEKYQEALAKG---------------------------------------ELLEA 81

Query: 121 IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 180
           IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL
Sbjct: 82  IKRDFGSFDKFKEKLTAASVGVQGSGWGWLGFNKERGHLQIAACPNQDPLQGTTGLIPLL 141

Query: 181 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 222
           GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK
Sbjct: 142 GIDVWEHAYYLQYKNVRPDYLKAIWNVINWENVTERYMACKK 183


>gi|239754273 PREDICTED: hypothetical protein XP_002345938 [Homo
           sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239748807 PREDICTED: hypothetical protein XP_002346806 [Homo
           sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239742846 PREDICTED: hypothetical protein XP_002342676 [Homo
           sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239740902 PREDICTED: hypothetical protein XP_002344080 [Homo
           sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239740832 PREDICTED: hypothetical protein XP_002344045 [Homo
           sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239740782 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239740729 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|239740679 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 107

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  HSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNGGGHINHSIFWTNLSPNGG 110
           H  HH A +  LN+  E  QEA+    V A + L P +           +F    +P   
Sbjct: 11  HCSHHTAQLPGLNLASESLQEAVR---VPADL-LDPQVP------PQSPLFLQRGAPGHQ 60

Query: 111 GEPKGELLEAIKRDFGSFDKFKEKLTAASVGV--QGSGWGWLGFN 153
           G   G  + + +   G   K  E     S GV   G G GWLGF+
Sbjct: 61  GCSHGLWVPSPRAGPGHITKSPEAAPPRSSGVLFPGPGPGWLGFS 105


>gi|150418009 transforming, acidic coiled-coil containing protein 2
            isoform a [Homo sapiens]
          Length = 2948

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 136  TAASVGVQGSGWGWLG--FNKERGHLQIAACPNQDPLQGTTG 175
            TA   G + SG G  G    +  G ++    P+QDP QGT+G
Sbjct: 1349 TAPGAGAKASGEGMAGDAAGETEGSMERMGEPSQDPKQGTSG 1390


>gi|20127422 Down syndrome cell adhesion molecule isoform CHD2-42
           precursor [Homo sapiens]
          Length = 2012

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 2/64 (3%)

Query: 33  YDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQEALAKGDVTAQIALQPALKFNG 92
           Y Y +++ + N+ ++  +H +   A+ NN  +     Q+ + +G+ T  + +QP L  + 
Sbjct: 530 YPYYSIKWYKNSNLLPFNHRQ--VAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQ 587

Query: 93  GGHI 96
             H+
Sbjct: 588 SVHV 591


>gi|22748973 protein interacting with cyclin A1 [Homo sapiens]
          Length = 336

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 33  YDYGALEPHINAQIMQLHHSKHHAAYVNNLNVTEEKYQE------ALAKGDVTAQIALQP 86
           + YG  + +    +  +HH  +H    ++LN  EE+ +E          G  TA   L  
Sbjct: 115 FRYGWCKSYRPVSVAVIHHPLYHECGADDLNEEEEEEEEESKPPIPTQVGPATASPDLGT 174

Query: 87  ALKFNGGGHINHSIFWTNLSPNGGGEPKGELLEAIKRDFGSFDKFKEK 134
           ++             W + SP G    KG+  + IK+     +K K+K
Sbjct: 175 SMATGTPDSTAPITIWRSESPTG----KGQGSKVIKKVKKKKEKEKDK 218


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,178,308
Number of Sequences: 37866
Number of extensions: 422225
Number of successful extensions: 885
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 873
Number of HSP's gapped (non-prelim): 15
length of query: 222
length of database: 18,247,518
effective HSP length: 98
effective length of query: 124
effective length of database: 14,536,650
effective search space: 1802544600
effective search space used: 1802544600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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