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Search of human proteins with 6681764
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|6681764 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
9, 39kDa [Homo sapiens]
(377 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|6681764 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9... 761 0.0
gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo s... 32 0.72
gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo sap... 32 0.72
gi|29789287 inositol 1,4,5-triphosphate receptor interacting pro... 32 0.72
gi|27735137 solute carrier family 38, member 11 [Homo sapiens] 31 1.6
gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens] 30 2.7
gi|239745448 PREDICTED: hypothetical protein XP_002343493 [Homo ... 30 3.6
gi|7705622 coiled-coil domain containing 53 [Homo sapiens] 30 4.6
gi|239752939 PREDICTED: hypothetical protein [Homo sapiens] 29 6.1
gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo ... 29 6.1
gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo ... 29 6.1
gi|4503593 epidermal growth factor receptor pathway substrate 15... 29 7.9
gi|5031737 dehydrogenase/reductase member 2 isoform 2 [Homo sapi... 29 7.9
gi|33667109 dehydrogenase/reductase member 2 isoform 1 [Homo sap... 29 7.9
gi|4503301 2,4-dienoyl CoA reductase 1 precursor [Homo sapiens] 29 7.9
gi|193804850 dehydrogenase/reductase (SDR family) X-linked [Homo... 29 7.9
>gi|6681764 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9,
39kDa [Homo sapiens]
Length = 377
Score = 761 bits (1964), Expect = 0.0
Identities = 377/377 (100%), Positives = 377/377 (100%)
Query: 1 MAAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFG 60
MAAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFG
Sbjct: 1 MAAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFG 60
Query: 61 ATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVV 120
ATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVV
Sbjct: 61 ATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSIRRVV 120
Query: 121 QHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRY 180
QHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRY
Sbjct: 121 QHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEKFIHVSHLNANIKSSSRY 180
Query: 181 LRNKAVGEKVVRDAFPEAIIVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPV 240
LRNKAVGEKVVRDAFPEAIIVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPV
Sbjct: 181 LRNKAVGEKVVRDAFPEAIIVKPSDIFGREDRFLNSFASMHRFGPIPLGSLGWKTVKQPV 240
Query: 241 YVVDVSKGIVNAVKDPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRW 300
YVVDVSKGIVNAVKDPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRW
Sbjct: 241 YVVDVSKGIVNAVKDPDANGKSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRW 300
Query: 301 VARVFEISPFEPWITRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTYR 360
VARVFEISPFEPWITRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTYR
Sbjct: 301 VARVFEISPFEPWITRDKVERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTYR 360
Query: 361 WLSAEIEDVKPAKTVNI 377
WLSAEIEDVKPAKTVNI
Sbjct: 361 WLSAEIEDVKPAKTVNI 377
>gi|193211614 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 32.3 bits (72), Expect = 0.72
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 42/237 (17%)
Query: 57 TVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSI 116
TV G +GFLG+++V L G V ++ ++ D Q+ F D + +
Sbjct: 41 TVIGGSGFLGQHMVEQLLARGYAV---------NVFDIQQGFDNPQVRFFLGDLCSRQDL 91
Query: 117 RRVVQHSNVVINLIGRDWETKNFDFEDVFVKI----PQAIAQLSKEAGVEKFIHVSHLN- 171
++ N V + + N +++F ++ + + + KEAGV+K I S +
Sbjct: 92 YPALKGVNTVFHCASPPPSSNN---KELFYRVNYIGTKNVIETCKEAGVQKLILTSSASV 148
Query: 172 ----ANIKSSSR-----------YLRNKAVGEKVVRDA-FPE----AIIVKPSDIFG-RE 210
+IK+ + Y K + E+ V A PE ++P IFG R+
Sbjct: 149 IFEGVDIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRPHGIFGPRD 208
Query: 211 DRFLNSFASMHRFGPIPLGSLGWKTVKQPVYVVDVSKGIVNAV----KDPDANGKSF 263
+ + R G + K + +V +V G + A +D GK+F
Sbjct: 209 PQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQLSRDSTLGGKAF 265
>gi|8393516 NAD(P) dependent steroid dehydrogenase-like [Homo
sapiens]
Length = 373
Score = 32.3 bits (72), Expect = 0.72
Identities = 52/237 (21%), Positives = 94/237 (39%), Gaps = 42/237 (17%)
Query: 57 TVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQLLFLEWDARDKDSI 116
TV G +GFLG+++V L G V ++ ++ D Q+ F D + +
Sbjct: 41 TVIGGSGFLGQHMVEQLLARGYAV---------NVFDIQQGFDNPQVRFFLGDLCSRQDL 91
Query: 117 RRVVQHSNVVINLIGRDWETKNFDFEDVFVKI----PQAIAQLSKEAGVEKFIHVSHLN- 171
++ N V + + N +++F ++ + + + KEAGV+K I S +
Sbjct: 92 YPALKGVNTVFHCASPPPSSNN---KELFYRVNYIGTKNVIETCKEAGVQKLILTSSASV 148
Query: 172 ----ANIKSSSR-----------YLRNKAVGEKVVRDA-FPE----AIIVKPSDIFG-RE 210
+IK+ + Y K + E+ V A PE ++P IFG R+
Sbjct: 149 IFEGVDIKNGTEDLPYAMKPIDYYTETKILQERAVLGANDPEKNFLTTAIRPHGIFGPRD 208
Query: 211 DRFLNSFASMHRFGPIPLGSLGWKTVKQPVYVVDVSKGIVNAV----KDPDANGKSF 263
+ + R G + K + +V +V G + A +D GK+F
Sbjct: 209 PQLVPILIEAARNGKMKFVIGNGKNLVDFTFVENVVHGHILAAEQLSRDSTLGGKAF 265
>gi|29789287 inositol 1,4,5-triphosphate receptor interacting
protein [Homo sapiens]
Length = 547
Score = 32.3 bits (72), Expect = 0.72
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
Query: 261 KSFAFVGPSRYLLFHLVKYIFAVAHRLFLPFPLPLFAYRWVARVFEISPF-EPWITRDKV 319
K GPS +HL A+ H L L A + AR+ E+ F E + + K+
Sbjct: 418 KQSRLTGPSGLSSYHLKT---ALLHLLLLRQAADWKAGQLDARLHELLCFLEKSLLQKKL 474
Query: 320 ERMHITDMKLPHLPGLEDLGIQATPLELKAIEVLRRHRTYRWLSAEIEDVKPA 372
I + K+P GL + ++A PL L VL+R + L + E +K A
Sbjct: 475 HHFFIGNRKVPEAMGLPEAVLRAEPLNLFRPFVLQRSLYRKTLDSFYEMLKNA 527
>gi|27735137 solute carrier family 38, member 11 [Homo sapiens]
Length = 384
Score = 31.2 bits (69), Expect = 1.6
Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 18/108 (16%)
Query: 261 KSFAFVGPSRYLLFHLVKY----------IFAVAHRLF----LPFPLPLFAYRWVARVFE 306
K+F F G YLL ++++ +F H + + F LPL YR +A++ +
Sbjct: 45 KTFGFPG---YLLLSVLQFLYPFIVDPENVFIGRHFIIGLSTVTFTLPLSLYRNIAKLGK 101
Query: 307 ISPFEPWITRDKVERMHITDMKL-PHLPGLEDLGIQATPLELKAIEVL 353
+S +T + + + L PH+P ED + A P ++A+ V+
Sbjct: 102 VSLISTGLTTLILGIVMARAISLGPHIPKTEDAWVFAKPNAIQAVGVM 149
>gi|4505939 DNA-directed RNA polymerase II A [Homo sapiens]
Length = 1970
Score = 30.4 bits (67), Expect = 2.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 305 FEISPFEPWITRDKVERMHITDMKL 329
F+++ PW+ R +++R H+TD KL
Sbjct: 1202 FDVARISPWLLRVELDRKHMTDRKL 1226
>gi|239745448 PREDICTED: hypothetical protein XP_002343493 [Homo
sapiens]
Length = 422
Score = 30.0 bits (66), Expect = 3.6
Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 9/73 (12%)
Query: 58 VFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLG-QLLFLEWDARDKDSI 116
V G G+LG + +HL + G+ VI+ + RP +L + F++ D RD++++
Sbjct: 38 VTGGGGYLGFSLGSHLAKSGTSVIL--------LDRRRPQWELSPETKFIQADVRDEEAL 89
Query: 117 RRVVQHSNVVINL 129
R + + V ++
Sbjct: 90 YRAFEGVDCVFHV 102
>gi|7705622 coiled-coil domain containing 53 [Homo sapiens]
Length = 194
Score = 29.6 bits (65), Expect = 4.6
Identities = 10/29 (34%), Positives = 21/29 (72%)
Query: 322 MHITDMKLPHLPGLEDLGIQATPLELKAI 350
++I D KL +PGL+D+ ++ +PL + ++
Sbjct: 66 LNILDAKLSSIPGLDDVTVEVSPLNVTSV 94
>gi|239752939 PREDICTED: hypothetical protein [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 6.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
++A++S R S+SRS + + SV P R+ + R S + VA GA
Sbjct: 207 SSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGA 266
Query: 62 TG 63
TG
Sbjct: 267 TG 268
>gi|239747479 PREDICTED: hypothetical protein XP_002347544 [Homo
sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 6.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
++A++S R S+SRS + + SV P R+ + R S + VA GA
Sbjct: 207 SSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGA 266
Query: 62 TG 63
TG
Sbjct: 267 TG 268
>gi|239741351 PREDICTED: hypothetical protein XP_002342181 [Homo
sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 6.1
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 2 AAAAQSRVVRVLSMSRSAITAIATSVCHGPPCRQLHHALMPHGKGGRSSVSGIVATVFGA 61
++A++S R S+SRS + + SV P R+ + R S + VA GA
Sbjct: 207 SSASRSSSARACSLSRSRASRLPASVARSSPSRRQRRSSSCSSACCRCSNASSVACFSGA 266
Query: 62 TG 63
TG
Sbjct: 267 TG 268
>gi|4503593 epidermal growth factor receptor pathway substrate 15
isoform A [Homo sapiens]
Length = 896
Score = 28.9 bits (63), Expect = 7.9
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 114 DSIRRVVQHSNVVINLIGRDWETKNFDFEDVFVKIPQAIAQLSKEAGVEK 163
D ++ V+ +S + ++++GR WE + D + + + A+A +EK
Sbjct: 149 DKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLVYCALEK 198
>gi|5031737 dehydrogenase/reductase member 2 isoform 2 [Homo
sapiens]
Length = 280
Score = 28.9 bits (63), Expect = 7.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 32 PCRQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYR 85
PC +L + G + ++ VA V G+T +G + L R G+ V+I R
Sbjct: 15 PCARLSVRMSSTGIDRKGVLANRVAVVTGSTSGIGFAIARRLARDGAHVVISSR 68
>gi|33667109 dehydrogenase/reductase member 2 isoform 1 [Homo
sapiens]
Length = 300
Score = 28.9 bits (63), Expect = 7.9
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 32 PCRQLHHALMPHGKGGRSSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYR 85
PC +L + G + ++ VA V G+T +G + L R G+ V+I R
Sbjct: 15 PCARLSVRMSSTGIDRKGVLANRVAVVTGSTSGIGFAIARRLARDGAHVVISSR 68
>gi|4503301 2,4-dienoyl CoA reductase 1 precursor [Homo sapiens]
Length = 335
Score = 28.9 bits (63), Expect = 7.9
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 49 SSVSGIVATVFGATGFLGRYVVNHLGRMGSQVIIPYRCDKYDIMHLRPMGDLGQ----LL 104
+S G VA + G LG+ + L +G+Q +I R K D++ Q +
Sbjct: 55 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASR--KMDVLKATAEQISSQTGNKVH 112
Query: 105 FLEWDARDKDSIR-------RVVQHSNVVIN 128
++ D RD D ++ +V H N+VIN
Sbjct: 113 AIQCDVRDPDMVQNTVSELIKVAGHPNIVIN 143
>gi|193804850 dehydrogenase/reductase (SDR family) X-linked [Homo
sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 7.9
Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 55 VATVFGATGFLGRYVVNHLGRMGSQVIIPYRCD---KYDIMHLRPMGDLGQLLFLEWDAR 111
VA V G T +G HL R+G VII D K + ++ ++ FL D
Sbjct: 45 VAIVTGGTDGIGYSTAKHLARLGMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLA 104
Query: 112 DKDSIRRVVQ 121
SIR+ VQ
Sbjct: 105 SMTSIRQFVQ 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.140 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,992,090
Number of Sequences: 37866
Number of extensions: 606977
Number of successful extensions: 1490
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1484
Number of HSP's gapped (non-prelim): 16
length of query: 377
length of database: 18,247,518
effective HSP length: 104
effective length of query: 273
effective length of database: 14,309,454
effective search space: 3906480942
effective search space used: 3906480942
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.