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Search of human proteins with 66346715
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|66346715 mature T-cell proliferation 1 [Homo sapiens]
(107 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|66346715 mature T-cell proliferation 1 [Homo sapiens] 225 5e-60
gi|148922879 T-cell leukemia/lymphoma 1A [Homo sapiens] 89 8e-19
gi|11415028 T-cell leukemia/lymphoma 1A [Homo sapiens] 89 8e-19
gi|40548375 T-cell leukemia/lymphoma 1B [Homo sapiens] 67 3e-12
gi|4759220 T-cell leukemia/lymphoma 1B [Homo sapiens] 67 3e-12
gi|31742498 unc-84 homolog B [Homo sapiens] 32 0.11
gi|154426292 arachidonate 12-lipoxygenase [Homo sapiens] 30 0.55
gi|148922852 general transcription factor IIH, polypeptide 2C [H... 26 7.9
gi|148922900 general transcription factor IIH, polypeptide 2B [H... 26 7.9
gi|42518080 transcription factor 7 (T-cell specific, HMG-box) is... 26 7.9
gi|6681762 general transcription factor IIH, polypeptide 2, 44kD... 26 7.9
gi|109809737 general transcription factor IIH, polypeptide 2D [H... 26 7.9
>gi|66346715 mature T-cell proliferation 1 [Homo sapiens]
Length = 107
Score = 225 bits (574), Expect = 5e-60
Identities = 107/107 (100%), Positives = 107/107 (100%)
Query: 1 MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPSHL 60
MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPSHL
Sbjct: 1 MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPSHL 60
Query: 61 LTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD 107
LTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD
Sbjct: 61 LTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD 107
>gi|148922879 T-cell leukemia/lymphoma 1A [Homo sapiens]
Length = 114
Score = 89.0 bits (219), Expect = 8e-19
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 3 GEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARV--QQIQVPLGDAARPSHL 60
GE V PD LW ++ +Y DE Q W+ + E L+ RV ++ V LG P+ +
Sbjct: 8 GEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQI 67
Query: 61 LTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD 107
S LP+MWQLYP+ RY ++S W++ +H+ + GV+++LL+LLPDD
Sbjct: 68 GPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114
>gi|11415028 T-cell leukemia/lymphoma 1A [Homo sapiens]
Length = 114
Score = 89.0 bits (219), Expect = 8e-19
Identities = 43/107 (40%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 3 GEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARV--QQIQVPLGDAARPSHL 60
GE V PD LW ++ +Y DE Q W+ + E L+ RV ++ V LG P+ +
Sbjct: 8 GEAVTDHPDRLWAWEKFVYLDEKQHAWLPLTIEIKDRLQLRVLLRREDVVLGRPMTPTQI 67
Query: 61 LTSQLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPDD 107
S LP+MWQLYP+ RY ++S W++ +H+ + GV+++LL+LLPDD
Sbjct: 68 GPSLLPIMWQLYPDGRYRSSDSSFWRLVYHIKIDGVEDMLLELLPDD 114
>gi|40548375 T-cell leukemia/lymphoma 1B [Homo sapiens]
Length = 128
Score = 67.0 bits (162), Expect = 3e-12
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 6 VGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPS------- 58
+G PP LW+ + GIY DE RTWV VV F +R + + G PS
Sbjct: 9 LGVPPGRLWIQRPGIYEDEEGRTWVTVV---VRFNPSRREWARASQGSRYEPSITVHLWQ 65
Query: 59 ------HLLTS------QLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPD 106
LL+S QLP +WQLYP +Y +S W+I H + +++L+L P+
Sbjct: 66 MAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVLTYQPE 125
>gi|4759220 T-cell leukemia/lymphoma 1B [Homo sapiens]
Length = 128
Score = 67.0 bits (162), Expect = 3e-12
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 22/120 (18%)
Query: 6 VGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGDAARPS------- 58
+G PP LW+ + GIY DE RTWV VV F +R + + G PS
Sbjct: 9 LGVPPGRLWIQRPGIYEDEEGRTWVTVV---VRFNPSRREWARASQGSRYEPSITVHLWQ 65
Query: 59 ------HLLTS------QLPLMWQLYPEERYMDNNSRLWQIQHHLMVRGVQELLLKLLPD 106
LL+S QLP +WQLYP +Y +S W+I H + +++L+L P+
Sbjct: 66 MAVHTRELLSSGQMPFSQLPAVWQLYPGRKYRAADSSFWEIADHGQIDSMEQLVLTYQPE 125
>gi|31742498 unc-84 homolog B [Homo sapiens]
Length = 717
Score = 32.0 bits (71), Expect = 0.11
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 1 MAGEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRARVQQIQVPLGD----AAR 56
++ ED A + L +E +++++R A ++EE S LRA QQ L A++
Sbjct: 323 LSHEDTLALLEGLVSRREAALKEDFRRETAARIQEELSALRAEHQQDSEDLFKKIVRASQ 382
Query: 57 PSHLLTSQLPLMWQLYPEERYMDNN 81
S QL WQ +E + +++
Sbjct: 383 ESEARIQQLKSEWQSMTQESFQESS 407
>gi|154426292 arachidonate 12-lipoxygenase [Homo sapiens]
Length = 663
Score = 29.6 bits (65), Expect = 0.55
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 35 EETSFLRARVQQIQVPLGDAARPSHLLTSQLPLMWQLYPEERYMDNNSRLWQIQHHLM 92
E L+ V QIQ P + P+ L S PL W L + +++ +L +IQ+HL+
Sbjct: 306 EPNGKLQPMVIQIQPPNPSSPTPTLFLPSDPPLAW-LLAKSWVRNSDFQLHEIQYHLL 362
>gi|148922852 general transcription factor IIH, polypeptide 2C
[Homo sapiens]
Length = 395
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 25 YQRTWVAVVEEETSFLRARVQQI 47
Y+RTW + E+E+ L+A ++ I
Sbjct: 15 YERTWEILKEDESGSLKATIEDI 37
>gi|148922900 general transcription factor IIH, polypeptide 2B
[Homo sapiens]
Length = 395
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 25 YQRTWVAVVEEETSFLRARVQQI 47
Y+RTW + E+E+ L+A ++ I
Sbjct: 15 YERTWEILKEDESGSLKATIEDI 37
>gi|42518080 transcription factor 7 (T-cell specific, HMG-box)
isoform 1 [Homo sapiens]
Length = 384
Score = 25.8 bits (55), Expect = 7.9
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 GEDVGAPPDHLWVHQEGIYRDEYQRTWVAVVEEETSFLRAR-VQQIQVPLGDAARP 57
G+D+GAP + L EG +D+ R A E + + L++ V + + G A P
Sbjct: 14 GDDLGAPDELLAFQDEGEEQDDKSRDSAAGPERDLAELKSSLVNESEGAAGGAGIP 69
>gi|6681762 general transcription factor IIH, polypeptide 2, 44kD
subunit [Homo sapiens]
Length = 395
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 25 YQRTWVAVVEEETSFLRARVQQI 47
Y+RTW + E+E+ L+A ++ I
Sbjct: 15 YERTWEILKEDESGSLKATIEDI 37
>gi|109809737 general transcription factor IIH, polypeptide 2D
[Homo sapiens]
Length = 395
Score = 25.8 bits (55), Expect = 7.9
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 25 YQRTWVAVVEEETSFLRARVQQI 47
Y+RTW + E+E+ L+A ++ I
Sbjct: 15 YERTWEILKEDESGSLKATIEDI 37
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,612,123
Number of Sequences: 37866
Number of extensions: 174314
Number of successful extensions: 391
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 12
length of query: 107
length of database: 18,247,518
effective HSP length: 77
effective length of query: 30
effective length of database: 15,331,836
effective search space: 459955080
effective search space used: 459955080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.