Guide to the Human Genome
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Name: TCL1A Sequence: fasta or formatted (114aa) NCBI GI: 11415028
Description:

T-cell leukemia/lymphoma 1A

Referenced in:

T cells

Other entries for this name:
alt mRNA [114aa] T-cell leukemia/lymphoma 1A
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.5          4           1
 C cysteine            0.9          1           1
 D aspartate           9.6         11           2
 E glutamate           7.0          8           1
 F phenylalanine       1.8          2           1
 G glycine             4.4          5           1
 H histidine           2.6          3           1
 I isoleucine          5.3          6           1
 K lysine              3.5          4           1
 L leucine            15.8         18           2
 M methionine          3.5          4           1
 N asparagine          0.0          0           0
 P proline             7.9          9           1
 Q glutamine           3.5          4           1
 R arginine            7.9          9           2
 S serine              4.4          5           2
 T threonine           4.4          5           1
 V valine              6.1          7           2
 W tryptophan          4.4          5           1
 Y tyrosine            3.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   T-cell leukemia/lymphoma 1A 
TCL1A                 1.000   T-cell leukemia/lymphoma 1A 
MTCP1                 0.295   mature T-cell proliferation 1 
TCL1B                 0.157   T-cell leukemia/lymphoma 1B 
TCL1B                 0.157   T-cell leukemia/lymphoma 1B 
COL7A1                0.014   alpha 1 type VII collagen precursor 
UBR4                  0.009   retinoblastoma-associated factor 600 
LOC100291378          0.005   PREDICTED: hypothetical protein XP_002346429 
LILRA1                0.005   leukocyte immunoglobulin-like receptor, subfamily A (...
MAK10                 0.005   corneal wound healing-related protein 
ALKBH4                0.005   alkB, alkylation repair homolog 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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