Search of human proteins with 63054868

Search of human proteins with 63054868

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63054868 YdjC homolog [Homo sapiens]
         (323 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|63054868 YdjC homolog [Homo sapiens]                               658   0.0  
gi|9910460 nitrilase family, member 2 [Homo sapiens]                   32   1.00 
gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo ...    31   1.7  
gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo ...    31   1.7  
gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]            30   2.2  
gi|239743918 PREDICTED: hypothetical protein XP_002342973 [Homo ...    30   2.2  
gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...    29   6.5  
gi|16445035 transglutaminase 7 [Homo sapiens]                          29   6.5  
gi|222136639 methylenetetrahydrofolate dehydrogenase 1 [Homo sap...    28   8.4  

>gi|63054868 YdjC homolog [Homo sapiens]
          Length = 323

 Score =  658 bits (1698), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)

Query: 1   MSRPRMRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIPT 60
           MSRPRMRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIPT
Sbjct: 1   MSRPRMRLVVTADDFGYCPRRDEGIVEAFLAGAVTSVSLLVNGAATESAAELARRHSIPT 60

Query: 61  GLHANLSEGRPVGPARRGASSLLGPEGFFLGKMGFREAVAAGDVDLPQVREELEAQLSCF 120
           GLHANLSEGRPVGPARRGASSLLGPEGFFLGKMGFREAVAAGDVDLPQVREELEAQLSCF
Sbjct: 61  GLHANLSEGRPVGPARRGASSLLGPEGFFLGKMGFREAVAAGDVDLPQVREELEAQLSCF 120

Query: 121 RELLGRAPTHADGHQHVHVLPGVCQVFAEALQAYGVRFTRLPLERGVGGCTWLEAPARAF 180
           RELLGRAPTHADGHQHVHVLPGVCQVFAEALQAYGVRFTRLPLERGVGGCTWLEAPARAF
Sbjct: 121 RELLGRAPTHADGHQHVHVLPGVCQVFAEALQAYGVRFTRLPLERGVGGCTWLEAPARAF 180

Query: 181 ACAVERDARAAVGPFSRHGLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTA 240
           ACAVERDARAAVGPFSRHGLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTA
Sbjct: 181 ACAVERDARAAVGPFSRHGLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTA 240

Query: 241 ELMAHPGYPSVPPTGGCGEGPDAFSCSWERLHELRVLTAPTLRAQLAQDGVQLCALDDLD 300
           ELMAHPGYPSVPPTGGCGEGPDAFSCSWERLHELRVLTAPTLRAQLAQDGVQLCALDDLD
Sbjct: 241 ELMAHPGYPSVPPTGGCGEGPDAFSCSWERLHELRVLTAPTLRAQLAQDGVQLCALDDLD 300

Query: 301 SKRPGEEVPCEPTLEPFLEPSLL 323
           SKRPGEEVPCEPTLEPFLEPSLL
Sbjct: 301 SKRPGEEVPCEPTLEPFLEPSLL 323


>gi|9910460 nitrilase family, member 2 [Homo sapiens]
          Length = 276

 Score = 31.6 bits (70), Expect = 1.00
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 78  GASSLLGPEGFFLGKMGFREAVAAGDVDLPQVREELEAQLSCFRE 122
           G S+++ P G  L K G  EA+   D+DL ++  E+  Q+  FR+
Sbjct: 220 GHSTVVNPWGEVLAKAGTEEAIVYSDIDLKKL-AEIRQQIPVFRQ 263


>gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo
           sapiens]
          Length = 244

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 214 RHMSAHRVSGALARVLEG--TLAGHTLTAELMAHPGYPSVPPTGGCGE-------GPDAF 264
           R    HRV  A+ RV EG   L G    A L AHP  P  PP     +       G  A 
Sbjct: 64  RRQLVHRVVAAV-RVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAG 122

Query: 265 SCSWERLHELRVLTAPTLRAQLAQDGVQL 293
           +C+    H    L     +AQLA   +QL
Sbjct: 123 ACAVAEQHR---LVGRVAQAQLAHAHLQL 148


>gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo
           sapiens]
          Length = 244

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 13/89 (14%)

Query: 214 RHMSAHRVSGALARVLEG--TLAGHTLTAELMAHPGYPSVPPTGGCGE-------GPDAF 264
           R    HRV  A+ RV EG   L G    A L AHP  P  PP     +       G  A 
Sbjct: 64  RRQLVHRVVAAV-RVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAG 122

Query: 265 SCSWERLHELRVLTAPTLRAQLAQDGVQL 293
           +C+    H    L     +AQLA   +QL
Sbjct: 123 ACAVAEQHR---LVGRVAQAQLAHAHLQL 148


>gi|239749645 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 122

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 199 GLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTAELMAHPG----YPSVPPT 254
           GLRWT      S C   +   +    +A   +    G +  A  +  P      P+ P T
Sbjct: 18  GLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCT 77

Query: 255 GGCGEGPDAFSCSWERLHELRVL 277
           GGC E    F+    ++H   VL
Sbjct: 78  GGCEERRSGFAA--RKVHTFLVL 98


>gi|239743918 PREDICTED: hypothetical protein XP_002342973 [Homo
           sapiens]
          Length = 122

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 22/83 (26%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 199 GLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTAELMAHPG----YPSVPPT 254
           GLRWT      S C   +   +    +A   +    G +  A  +  P      P+ P T
Sbjct: 18  GLRWTPRHGAFSRCRSPLPTRKALENIAGPAKPRKCGLSFVAHFLNFPEGAKFLPAPPCT 77

Query: 255 GGCGEGPDAFSCSWERLHELRVL 277
           GGC E    F+    ++H   VL
Sbjct: 78  GGCEERRSGFAA--RKVHTFLVL 98


>gi|92091600 ArfGAP with RhoGAP domain, ankyrin repeat and PH domain
           1 isoform c [Homo sapiens]
          Length = 1450

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 14/75 (18%)

Query: 193 GPFSRHGLRWTDAFVGLSTCGRHMSAHRVSGALARVLEGTLAGHTLTA------------ 240
           G F +HGL W     GLS          + G   R+L G L  HT  A            
Sbjct: 25  GLFEQHGLVWATECQGLSDTRLMDMGMLLPGHRRRILAGLLRAHTSPAPAPRPTPRPVPM 84

Query: 241 --ELMAHPGYPSVPP 253
              +   P  P+ PP
Sbjct: 85  KRHIFRSPPVPATPP 99


>gi|16445035 transglutaminase 7 [Homo sapiens]
          Length = 710

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 183 AVERDARAAVGPFSRHGLRWTDAF-VGLSTCGRHMSAHR-VSGALARVLEGTLAGHTLTA 240
           ++E   RA VG   R  +  T+   V LS+C   +     ++G +A+ L   +AGHTL  
Sbjct: 611 SIEVSERAEVGKALRVHVTLTNTLMVALSSCTMVLEGSGLINGQIAKDLGTLVAGHTLQI 670

Query: 241 ELMAHP 246
           +L  +P
Sbjct: 671 QLDLYP 676


>gi|222136639 methylenetetrahydrofolate dehydrogenase 1 [Homo
           sapiens]
          Length = 935

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)

Query: 58  IPTGLHANLSEGRPVGPARRGASSLLGPEGFFLGKMGF 95
           +  G  AN++ G     A R A  L+GPEGF + + GF
Sbjct: 634 VHAGPFANIAHGNSSIIADRIALKLVGPEGFVVTEAGF 671


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,837,617
Number of Sequences: 37866
Number of extensions: 659568
Number of successful extensions: 1799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1794
Number of HSP's gapped (non-prelim): 11
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.