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Search of human proteins with 63003930
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|63003930 transmembrane protein 30B [Homo sapiens]
(351 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|63003930 transmembrane protein 30B [Homo sapiens] 744 0.0
gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens] 364 e-101
gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens] 325 3e-89
gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens] 39 0.007
gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens] 39 0.007
gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens] 39 0.007
gi|4503143 cathepsin D preproprotein [Homo sapiens] 32 0.85
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 32 1.1
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 32 1.1
>gi|63003930 transmembrane protein 30B [Homo sapiens]
Length = 351
Score = 744 bits (1920), Expect = 0.0
Identities = 351/351 (100%), Positives = 351/351 (100%)
Query: 1 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI 60
MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI
Sbjct: 1 MTWSATARGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGI 60
Query: 61 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN 120
KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN
Sbjct: 61 KELEYDYTGDPGTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQN 120
Query: 121 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR 180
NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR
Sbjct: 121 NRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQR 180
Query: 181 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP 240
QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP
Sbjct: 181 QPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDP 240
Query: 241 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK 300
NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK
Sbjct: 241 NNTGFINQDFVVWMRTAALPTFRKLYARIRQGNYSAGLPRGAYRVNITYNYPVRAFGGHK 300
Query: 301 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE 351
LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE
Sbjct: 301 LLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDDDDEE 351
>gi|8922720 transmembrane protein 30A isoform 1 [Homo sapiens]
Length = 361
Score = 364 bits (935), Expect = e-101
Identities = 181/337 (53%), Positives = 234/337 (69%), Gaps = 9/337 (2%)
Query: 12 QPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDP 71
+PDNTAF QQRLPAWQP+L+A LP+FF GL FI +G+G++ +SN I+E+E DYTG
Sbjct: 27 RPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIEIDYTGTE 86
Query: 72 GTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDA 131
+ C+ C + PC C F+L + F+G V++YY L+NFYQN+RRY SRDD+
Sbjct: 87 PSSPCNKCLSPDV-----TPCFCTINFTLEKSFEGNVFMYYGLSNFYQNHRRYVKSRDDS 141
Query: 132 QLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPL 191
QL+G SAL +P EC PY+R+ PIAPCGAIANS+FND+ L+ P + + L
Sbjct: 142 QLNGDSSALLNPSKECEPYRRNE-DKPIAPCGAIANSMFNDTLELFLIGNDSYP-IPIAL 199
Query: 192 DRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFV 251
+ GIAWWTD +VKFRNPP +L F+GT P NW +PVY L DP+N GFIN+DF+
Sbjct: 200 KKKGIAWWTDKNVKFRNPP-GGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFI 258
Query: 252 VWMRTAALPTFRKLYARI-RQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWM 310
VWMRTAALPTFRKLY I R+ + LP G Y +N+TYNYPV F G K +I S+ISWM
Sbjct: 259 VWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWM 318
Query: 311 GGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDD 347
GGKNPFLGIAY+ VGS+ L G V+LV+ +Y++ +
Sbjct: 319 GGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSN 355
>gi|221139888 transmembrane protein 30A isoform 2 [Homo sapiens]
Length = 325
Score = 325 bits (834), Expect = 3e-89
Identities = 169/337 (50%), Positives = 216/337 (64%), Gaps = 45/337 (13%)
Query: 12 QPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDP 71
+PDNTAF QQRLPAWQP+L+A LP+FF GL FI +G+G++ +SN I+E+E
Sbjct: 27 RPDNTAFKQQRLPAWQPILTAGTVLPIFFIIGLIFIPIGIGIFVTSNNIREIE------- 79
Query: 72 GTGNCSVCAAAGQGRALPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDA 131
G V++YY L+NFYQN+RRY SRDD+
Sbjct: 80 ----------------------------------GNVFMYYGLSNFYQNHRRYVKSRDDS 105
Query: 132 QLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPL 191
QL+G SAL +P EC PY+R+ PIAPCGAIANS+FND+ L+ P + + L
Sbjct: 106 QLNGDSSALLNPSKECEPYRRNE-DKPIAPCGAIANSMFNDTLELFLIGNDSYP-IPIAL 163
Query: 192 DRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFV 251
+ GIAWWTD +VKFRNPP +L F+GT P NW +PVY L DP+N GFIN+DF+
Sbjct: 164 KKKGIAWWTDKNVKFRNPP-GGDNLEERFKGTTKPVNWLKPVYMLDSDPDNNGFINEDFI 222
Query: 252 VWMRTAALPTFRKLYARI-RQGNYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWM 310
VWMRTAALPTFRKLY I R+ + LP G Y +N+TYNYPV F G K +I S+ISWM
Sbjct: 223 VWMRTAALPTFRKLYRLIERKSDLHPTLPAGRYSLNVTYNYPVHYFDGRKRMILSTISWM 282
Query: 311 GGKNPFLGIAYLVVGSLCILTGFVMLVVYIRYQDQDD 347
GGKNPFLGIAY+ VGS+ L G V+LV+ +Y++ +
Sbjct: 283 GGKNPFLGIAYIAVGSISFLLGVVLLVINHKYRNSSN 319
>gi|239753641 PREDICTED: transmembrane protein 30C [Homo sapiens]
Length = 113
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 14 DNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGT 73
DN+A QQ LP + +A L +FF G+ + +G+ L S+ +E+E +Y T
Sbjct: 14 DNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINY-----T 68
Query: 74 GNCSVCAAAGQGRA-LPPPCSCAWYFSL 100
C+ CA + + C+C+ F L
Sbjct: 69 RICANCAKLRENASNFDKECTCSIPFYL 96
>gi|239748184 PREDICTED: transmembrane protein 30C [Homo sapiens]
Length = 113
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 14 DNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGT 73
DN+A QQ LP + +A L +FF G+ + +G+ L S+ +E+E +Y T
Sbjct: 14 DNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINY-----T 68
Query: 74 GNCSVCAAAGQGRA-LPPPCSCAWYFSL 100
C+ CA + + C+C+ F L
Sbjct: 69 RICANCAKLRENASNFDKECTCSIPFYL 96
>gi|239742078 PREDICTED: transmembrane protein 30C [Homo sapiens]
Length = 113
Score = 38.9 bits (89), Expect = 0.007
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 14 DNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGT 73
DN+A QQ LP + +A L +FF G+ + +G+ L S+ +E+E +Y T
Sbjct: 14 DNSALKQQELPIHRLYFTARRVLFVFFATGIFCLCMGIILILSARSTQEIEINY-----T 68
Query: 74 GNCSVCAAAGQGRA-LPPPCSCAWYFSL 100
C+ CA + + C+C+ F L
Sbjct: 69 RICANCAKLRENASNFDKECTCSIPFYL 96
>gi|4503143 cathepsin D preproprotein [Homo sapiens]
Length = 412
Score = 32.0 bits (71), Expect = 0.85
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 11/98 (11%)
Query: 28 PLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRA 87
PL+ +P + L I L LG G K DYT ++C + G
Sbjct: 319 PLIQGEYMIPCEKVSTLPAITLKLG----GKGYKLSPEDYTLKVSQAGKTLCLSGFMGMD 374
Query: 88 LPPPCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYG 125
+PPP W L ++F G Y T F ++N R G
Sbjct: 375 IPPPSGPLWI--LGDVFIGRYY-----TVFDRDNNRVG 405
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 1.1
Identities = 43/185 (23%), Positives = 60/185 (32%), Gaps = 34/185 (18%)
Query: 80 AAAGQGRALPPP----------CSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRD 129
+AA G +PPP C W ++F+ P +L+ + + + S
Sbjct: 330 SAAPAGVGVPPPATGGGDGPFACPLCW-----KVFKKPSHLHQHQI-IHTGEKPFSCSVC 383
Query: 130 DAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQ-----PGG 184
+ S RH A R PCG + + S+ L HQ GG
Sbjct: 384 SKSFNRRESLKRHVKTHSADLLR-------LPCGICGKAFRDASYLLKHQAAHAGAGAGG 436
Query: 185 PYVEVPLDRSGIAWWTDY----HVKFRNPPLVNGSLAL--AFQGTAPPPNWRRPVYELSP 238
P P D G ++ H PP A PPP + Y L P
Sbjct: 437 PRPVYPCDLCGKSYSAPQSLLRHKAAHAPPAAAAEAPKDGAASAPQPPPTFPPGPYLLPP 496
Query: 239 DPNNT 243
DP T
Sbjct: 497 DPPTT 501
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 31.6 bits (70), Expect = 1.1
Identities = 43/185 (23%), Positives = 60/185 (32%), Gaps = 34/185 (18%)
Query: 80 AAAGQGRALPPP----------CSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRD 129
+AA G +PPP C W ++F+ P +L+ + + + S
Sbjct: 330 SAAPAGVGVPPPATGGGDGPFACPLCW-----KVFKKPSHLHQHQI-IHTGEKPFSCSVC 383
Query: 130 DAQLSGLPSALRHPVNECAPYQRSAAGLPIAPCGAIANSLFNDSFSLWHQRQ-----PGG 184
+ S RH A R PCG + + S+ L HQ GG
Sbjct: 384 SKSFNRRESLKRHVKTHSADLLR-------LPCGICGKAFRDASYLLKHQAAHAGAGAGG 436
Query: 185 PYVEVPLDRSGIAWWTDY----HVKFRNPPLVNGSLAL--AFQGTAPPPNWRRPVYELSP 238
P P D G ++ H PP A PPP + Y L P
Sbjct: 437 PRPVYPCDLCGKSYSAPQSLLRHKAAHAPPAAAAEAPKDGAASAPQPPPTFPPGPYLLPP 496
Query: 239 DPNNT 243
DP T
Sbjct: 497 DPPTT 501
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.140 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,308,665
Number of Sequences: 37866
Number of extensions: 834320
Number of successful extensions: 1637
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1621
Number of HSP's gapped (non-prelim): 10
length of query: 351
length of database: 18,247,518
effective HSP length: 103
effective length of query: 248
effective length of database: 14,347,320
effective search space: 3558135360
effective search space used: 3558135360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.