Guide to the Human Genome
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Name: TMEM30B Sequence: fasta or formatted (351aa) NCBI GI: 63003930
Description:

transmembrane protein 30B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         33           3
 C cysteine            2.3          8           1
 D aspartate           4.3         15           4
 E glutamate           2.6          9           2
 F phenylalanine       5.1         18           2
 G glycine             9.1         32           2
 H histidine           1.4          5           1
 I isoleucine          4.0         14           1
 K lysine              1.4          5           1
 L leucine            10.3         36           2
 M methionine          1.1          4           1
 N asparagine          5.4         19           2
 P proline             8.5         30           3
 Q glutamine           4.6         16           2
 R arginine            6.0         21           2
 S serine              6.6         23           2
 T threonine           4.0         14           1
 V valine              5.1         18           2
 W tryptophan          2.6          9           2
 Y tyrosine            6.3         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane protein 30B 
TMEM30A               0.471   transmembrane protein 30A isoform 1 
TMEM30A               0.417   transmembrane protein 30A isoform 2 
TMEM30C               0.019   PREDICTED: transmembrane protein 30C 
TMEM30C               0.019   PREDICTED: transmembrane protein 30C 
TMEM30C               0.019   PREDICTED: transmembrane protein 30C 
CTSD                  0.010   cathepsin D preproprotein 
LOC100133142          0.010   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.010   PREDICTED: similar to zinc finger protein 208 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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