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Search of human proteins with 61743952
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|61743952 1-acylglycerol-3-phosphate O-acyltransferase 5
[Homo sapiens]
(364 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|61743952 1-acylglycerol-3-phosphate O-acyltransferase 5 [Homo... 745 0.0
gi|42558246 lysocardiolipin acyltransferase 1 isoform 1 [Homo sa... 114 1e-25
gi|50659059 lysocardiolipin acyltransferase 1 isoform 2 [Homo sa... 114 1e-25
gi|9910392 1-acylglycerol-3-phosphate O-acyltransferase 4 [Homo ... 100 3e-21
gi|83267874 1-acylglycerol-3-phosphate O-acyltransferase 3 [Homo... 90 4e-18
gi|9910394 1-acylglycerol-3-phosphate O-acyltransferase 3 [Homo ... 90 4e-18
gi|7661996 lysophosphatidylglycerol acyltransferase 1 [Homo sapi... 65 1e-10
gi|154426264 ubiquitin protein ligase E3 component n-recognin 7 ... 31 1.5
gi|154426322 ubiquitin protein ligase E3 component n-recognin 7 ... 31 1.5
gi|78000158 eukaryotic translation initiation factor 2B, subunit... 30 4.4
gi|78000156 eukaryotic translation initiation factor 2B, subunit... 30 4.4
gi|187607323 eukaryotic translation initiation factor 2B, subuni... 30 4.4
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 30 4.4
gi|224458301 family with sequence similarity 186, member A [Homo... 29 7.6
gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo... 28 9.9
>gi|61743952 1-acylglycerol-3-phosphate O-acyltransferase 5 [Homo
sapiens]
Length = 364
Score = 745 bits (1924), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 1 MLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQS 60
MLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQS
Sbjct: 1 MLLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQS 60
Query: 61 MVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLK 120
MVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLK
Sbjct: 61 MVLFFFENYTGVQILLYGDLPKNKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLK 120
Query: 121 EGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPE 180
EGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPE
Sbjct: 121 EGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPE 180
Query: 181 QTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQ 240
QTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQ
Sbjct: 181 QTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQ 240
Query: 241 RRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPD 300
RRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPD
Sbjct: 241 RRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPD 300
Query: 301 PERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWIYGTLLGCLWV 360
PERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWIYGTLLGCLWV
Sbjct: 301 PERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWIYGTLLGCLWV 360
Query: 361 TIKA 364
TIKA
Sbjct: 361 TIKA 364
>gi|42558246 lysocardiolipin acyltransferase 1 isoform 1 [Homo
sapiens]
Length = 414
Score = 114 bits (285), Expect = 1e-25
Identities = 81/284 (28%), Positives = 139/284 (48%), Gaps = 21/284 (7%)
Query: 37 LLSAFLPARF-----YQALDDRLYCVYQSMVLFFFENYTGVQILLYGDLPKNKENIIYLA 91
+LS FLP F Y+ +++RL + ++ + E GV++++ GD E + +
Sbjct: 62 MLSPFLPLMFVNPSWYRWINNRLVATWLTLPVALLETMFGVKVIITGDAFVPGERSVIIM 121
Query: 92 NHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKE 151
NH++ +DW+ +R + L + LK LK +P +G I++ R K ++
Sbjct: 122 NHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSH 181
Query: 152 MRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKAT 211
+ + + D P+ L+IFPEGT E +K S S AFA + GL ++VL PR
Sbjct: 182 FEDMIDYFCDIHEPLQLLIFPEGTDLT-ENSK--SRSNAFAEKNGLQKYEYVLHPRTTGF 238
Query: 212 HVAFDCMK--NYLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPK-IHIHIDRIDKK 268
D ++ LDA++D+TV Y ++ L + P+ IH H+ R
Sbjct: 239 TFVVDRLREGKNLDAVHDITVAYPHNIPQSEK-------HLLQGDFPREIHFHVHRYPID 291
Query: 269 DVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPGKSV 312
+P +E ++ W H+R+E K++ L FY+ E+ F G+SV
Sbjct: 292 TLPTSKEDLQLWCHKRWEEKEERLRSFYQG---EKNFYFTGQSV 332
>gi|50659059 lysocardiolipin acyltransferase 1 isoform 2 [Homo
sapiens]
Length = 376
Score = 114 bits (285), Expect = 1e-25
Identities = 81/284 (28%), Positives = 139/284 (48%), Gaps = 21/284 (7%)
Query: 37 LLSAFLPARF-----YQALDDRLYCVYQSMVLFFFENYTGVQILLYGDLPKNKENIIYLA 91
+LS FLP F Y+ +++RL + ++ + E GV++++ GD E + +
Sbjct: 24 MLSPFLPLMFVNPSWYRWINNRLVATWLTLPVALLETMFGVKVIITGDAFVPGERSVIIM 83
Query: 92 NHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKE 151
NH++ +DW+ +R + L + LK LK +P +G I++ R K ++
Sbjct: 84 NHRTRMDWMFLWNCLMRYSYLRLEKICLKASLKGVPGFGWAMQAAAYIFIHRKWKDDKSH 143
Query: 152 MRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKAT 211
+ + + D P+ L+IFPEGT E +K S S AFA + GL ++VL PR
Sbjct: 144 FEDMIDYFCDIHEPLQLLIFPEGTDLT-ENSK--SRSNAFAEKNGLQKYEYVLHPRTTGF 200
Query: 212 HVAFDCMK--NYLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPK-IHIHIDRIDKK 268
D ++ LDA++D+TV Y ++ L + P+ IH H+ R
Sbjct: 201 TFVVDRLREGKNLDAVHDITVAYPHNIPQSEK-------HLLQGDFPREIHFHVHRYPID 253
Query: 269 DVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPGKSV 312
+P +E ++ W H+R+E K++ L FY+ E+ F G+SV
Sbjct: 254 TLPTSKEDLQLWCHKRWEEKEERLRSFYQG---EKNFYFTGQSV 294
>gi|9910392 1-acylglycerol-3-phosphate O-acyltransferase 4 [Homo
sapiens]
Length = 378
Score = 100 bits (248), Expect = 3e-21
Identities = 66/259 (25%), Positives = 128/259 (49%), Gaps = 16/259 (6%)
Query: 45 RFYQALDDRL-YCVYQSMVLFFFENYTGVQILLYGD----LPKNKENIIYLANHQSTVDW 99
+ ++ ++ RL YC+ +V+ E ++G + ++ D L KEN I + NH+ +D+
Sbjct: 44 QLFRKINCRLSYCISSQLVMLL-EWWSGTECTIFTDPRAYLKYGKENAIVVLNHKFEIDF 102
Query: 100 IVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSY 159
+ L+ R LG + + K+ L ++P+ G + ++ R + + K + LQ
Sbjct: 103 LCGWSLSERFGLLGGSKVLAKKELAYVPIIGWMWYFTEMVFCSRKWEQDRKTVATSLQHL 162
Query: 160 VDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMK 219
D + +I EGTR+ ++ ++ S A +GL LKH L PR K + ++
Sbjct: 163 RDYPEKYFFLIHCEGTRFTEKKHEI---SMQVARAKGLPRLKHHLLPRTKGFAITVRSLR 219
Query: 220 NYLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRR 279
N + A+YD T+ + + E+PT+ L + +++ RI +D+PE+ +
Sbjct: 220 NVVSAVYDCTLNF-------RNNENPTLLGVLNGKKYHADLYVRRIPLEDIPEDDDECSA 272
Query: 280 WLHERFEIKDKMLIEFYES 298
WLH+ ++ KD E+Y +
Sbjct: 273 WLHKLYQEKDAFQEEYYRT 291
>gi|83267874 1-acylglycerol-3-phosphate O-acyltransferase 3 [Homo
sapiens]
Length = 376
Score = 89.7 bits (221), Expect = 4e-18
Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 20/270 (7%)
Query: 45 RFYQALDDRLYCVYQSMVLFFFENYTGVQILLYGDLPK----NKENIIYLANHQSTVDWI 100
+ Y+ L+ RL S ++ E ++ + L+ D KE+ + + NH +D++
Sbjct: 44 QLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFL 103
Query: 101 VADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYV 160
+ R LG + + K+ L ++PL G + ++ KR + + + L+
Sbjct: 104 CGWTMCERFGVLGSSKVLAKKELLYVPLIGWTWYFLEIVFCKRKWEEDRDTVVEGLRRLS 163
Query: 161 DAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKN 220
D M+ +++ EGTR+ + +V S AA +GL VLK+ L PR K A C++
Sbjct: 164 DYPEYMWFLLYCEGTRFTETKHRV---SMEVAAAKGLPVLKYHLLPRTKGFTTAVKCLRG 220
Query: 221 YLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRW 280
+ A+YDVT+ + G ++P++ L + + + + R +D+P +++ +W
Sbjct: 221 TVAAVYDVTLNFRG-------NKNPSLLGILYGKKYEADMCVRRFPLEDIPLDEKEAAQW 273
Query: 281 LHERFEIKDKMLIEFYESPDPERRKRFPGK 310
LH+ ++ KD L E Y ++ FPG+
Sbjct: 274 LHKLYQEKD-ALQEIY-----NQKGMFPGE 297
>gi|9910394 1-acylglycerol-3-phosphate O-acyltransferase 3 [Homo
sapiens]
Length = 376
Score = 89.7 bits (221), Expect = 4e-18
Identities = 67/270 (24%), Positives = 130/270 (48%), Gaps = 20/270 (7%)
Query: 45 RFYQALDDRLYCVYQSMVLFFFENYTGVQILLYGDLPK----NKENIIYLANHQSTVDWI 100
+ Y+ L+ RL S ++ E ++ + L+ D KE+ + + NH +D++
Sbjct: 44 QLYRRLNCRLAYSLWSQLVMLLEWWSCTECTLFTDQATVERFGKEHAVIILNHNFEIDFL 103
Query: 101 VADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRNKLQSYV 160
+ R LG + + K+ L ++PL G + ++ KR + + + L+
Sbjct: 104 CGWTMCERFGVLGSSKVLAKKELLYVPLIGWTWYFLEIVFCKRKWEEDRDTVVEGLRRLS 163
Query: 161 DAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKN 220
D M+ +++ EGTR+ + +V S AA +GL VLK+ L PR K A C++
Sbjct: 164 DYPEYMWFLLYCEGTRFTETKHRV---SMEVAAAKGLPVLKYHLLPRTKGFTTAVKCLRG 220
Query: 221 YLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRW 280
+ A+YDVT+ + G ++P++ L + + + + R +D+P +++ +W
Sbjct: 221 TVAAVYDVTLNFRG-------NKNPSLLGILYGKKYEADMCVRRFPLEDIPLDEKEAAQW 273
Query: 281 LHERFEIKDKMLIEFYESPDPERRKRFPGK 310
LH+ ++ KD L E Y ++ FPG+
Sbjct: 274 LHKLYQEKD-ALQEIY-----NQKGMFPGE 297
>gi|7661996 lysophosphatidylglycerol acyltransferase 1 [Homo
sapiens]
Length = 370
Score = 65.1 bits (157), Expect = 1e-10
Identities = 60/259 (23%), Positives = 109/259 (42%), Gaps = 42/259 (16%)
Query: 69 YTGVQILLYGDLPK--NKENIIYLANHQSTVDWIVADILAIRQN---ALGHVRYVLKEGL 123
Y G ++ +G+ K +K+ + L NHQ+T D V ++ Q+ + + +++
Sbjct: 75 YAGYTVMEWGEDIKAVSKDEAVMLVNHQATGD--VCTLMMCLQDKGLVVAQMMWLMDHIF 132
Query: 124 KWLPLYGCYFAQHGGIYVKRSAKFNEKEM---RNKLQSYVDAGTPMYLVIFPEGTRYNPE 180
K+ +G HG ++++ + ++++ + L++ + ++V+FPEG
Sbjct: 133 KYTN-FGIVSLVHGDFFIRQGRSYRDQQLLLLKKHLENNYRSRDRKWIVLFPEGGFLRKR 191
Query: 181 QTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAF--------------------DCMKN 220
+ SQAFA + L L +V PR AT + D
Sbjct: 192 R----ETSQAFAKKNNLPFLTNVTLPRSGATKIILNALVAQQKNGSPAGGDAKELDSKSK 247
Query: 221 YLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCKECPKI-HIHIDRIDKKDVPEEQEHMRR 279
L I D T+ Y + T L P + H+H KDVP E + +
Sbjct: 248 GLQWIIDTTIAYP------KAEPIDIQTWILGYRKPTVTHVHYRIFPIKDVPLETDDLTT 301
Query: 280 WLHERFEIKDKMLIEFYES 298
WL++RF K+ +L FYE+
Sbjct: 302 WLYQRFVEKEDLLSHFYET 320
>gi|154426264 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 3 [Homo sapiens]
Length = 349
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 216 DCMKNY--LDAI-----YDVTVVYEGKDDGGQR--RESPTM-TEFLCKECPKIHIHIDRI 265
DCMK Y LD + YD + YE K Q R P M T ++ + +
Sbjct: 242 DCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYN 301
Query: 266 DKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPG 309
D K E +++++R+ E +K + + +F+E ++R+R G
Sbjct: 302 DLKT--ELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDG 343
>gi|154426322 ubiquitin protein ligase E3 component n-recognin 7
(putative) isoform 2 [Homo sapiens]
Length = 425
Score = 31.2 bits (69), Expect = 1.5
Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 12/104 (11%)
Query: 216 DCMKNY--LDAI-----YDVTVVYEGKDDGGQR--RESPTM-TEFLCKECPKIHIHIDRI 265
DCMK Y LD + YD + YE K Q R P M T ++ + +
Sbjct: 318 DCMKMYGDLDVLFLTDEYDTVLAYENKGKIAQATDRSDPLMDTLSSMNRVQQVELICEYN 377
Query: 266 DKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPG 309
D K E +++++R+ E +K + + +F+E ++R+R G
Sbjct: 378 DLKT--ELKDYLKRFADEGTVVKREDIQQFFEEFQSKKRRRVDG 419
>gi|78000158 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 2 [Homo sapiens]
Length = 523
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 151 EMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAA 193
E R+ L+S V AG P ++ P + PE +KVL + A A
Sbjct: 368 EGRHTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLA 410
>gi|78000156 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 3 [Homo sapiens]
Length = 522
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 151 EMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAA 193
E R+ L+S V AG P ++ P + PE +KVL + A A
Sbjct: 367 EGRHTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLA 409
>gi|187607323 eukaryotic translation initiation factor 2B, subunit 4
delta isoform 1 [Homo sapiens]
Length = 543
Score = 29.6 bits (65), Expect = 4.4
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 151 EMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAA 193
E R+ L+S V AG P ++ P + PE +KVL + A A
Sbjct: 388 EGRHTLRSLVHAGVPASYLLIPAASYVLPEVSKVLLGAHALLA 430
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 29.6 bits (65), Expect = 4.4
Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 233 EGKDDGGQRRESPTMTEFLCKECPKIHIHI-DRI----DKKDVPEEQEHMRRWLHERFEI 287
E +D +R S T+ + L + ++ +H+ +R+ +K + EE +M++ E
Sbjct: 420 EKMNDDHNKRLSETVDKLLSESNERLQLHLKERMGALEEKNSLSEEIANMKKLQDELLLN 479
Query: 288 KDKMLIEFYES----------PDPERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAG 334
K+++L E P + PG ++ + S TLPS L AG
Sbjct: 480 KEQLLAEMERMQMEIDQLRGRPPSSYSRSLPGSALELRYSQAPTLPSGAHLDPYVAG 536
>gi|224458301 family with sequence similarity 186, member A [Homo
sapiens]
Length = 2351
Score = 28.9 bits (63), Expect = 7.6
Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 18/168 (10%)
Query: 139 IYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLS-----ASQAFAA 193
I V+ + + +KE + +++S V+ P+ ++ F + P++ K+ +S +
Sbjct: 565 IKVEPTTESLDKEGKGEIRSLVE---PLSMIQFDDTAE--PQKGKIKGKKHHISSGTITS 619
Query: 194 QRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQRRESPTMTEFLCK 253
+ K LT ++K+ H + + T V E D + E + EF
Sbjct: 620 KEEKTEEKEELTKQVKS-HQLVKSLSRVAKETSESTRVLESPDG---KSEQSNLEEFQEA 675
Query: 254 ECPKIHIHIDRI----DKKDVPEEQEHMRRWLHERFEIKDKMLIEFYE 297
+ ID I DKK VP+E+E ++R E+ I + E+++
Sbjct: 676 IMAFLKQKIDNIGKAFDKKTVPKEEELLKRAEAEKLGIIKAKMEEYFQ 723
>gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo
sapiens]
Length = 1014
Score = 28.5 bits (62), Expect = 9.9
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 230 VVYEGKDDGGQRRESPTMTEFL----------CKEC-PKIHIHIDRIDKKDVPEEQEHMR 278
V +G+D G + E T+ +F CK C KI R+ KK V E+ +
Sbjct: 94 VTGKGQDGIGSKAEK-TLGDFAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLG 152
Query: 279 ---RWLHERFEIKDKMLIEFYESPDPERRKRFPGKSVNSKLSIKKTLPSM 325
RW H +K++ + F + K F + K ++KK LP +
Sbjct: 153 MIDRWYHPGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGV 202
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,616,922
Number of Sequences: 37866
Number of extensions: 604010
Number of successful extensions: 1686
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1662
Number of HSP's gapped (non-prelim): 15
length of query: 364
length of database: 18,247,518
effective HSP length: 104
effective length of query: 260
effective length of database: 14,309,454
effective search space: 3720458040
effective search space used: 3720458040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.