Search of human proteins with 60460881

Search of human proteins with 60460881

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|60460881 zinc finger, SWIM-type containing 1 [Homo sapiens]
         (485 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|60460881 zinc finger, SWIM-type containing 1 [Homo sapiens]        993   0.0  
gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]      197   1e-50
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo...    41   0.002
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo...    37   0.053
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo...    37   0.053
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [...    36   0.090
gi|217330658 hypothetical protein LOC9812 [Homo sapiens]               30   3.8  
gi|217330656 hypothetical protein LOC9812 [Homo sapiens]               30   3.8  

>gi|60460881 zinc finger, SWIM-type containing 1 [Homo sapiens]
          Length = 485

 Score =  993 bits (2568), Expect = 0.0
 Identities = 485/485 (100%), Positives = 485/485 (100%)

Query: 1   MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDT 60
           MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDT
Sbjct: 1   MLERLKAPWSAALQRKYFDLGIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDT 60

Query: 61  FNYQSCFMQSVFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKE 120
           FNYQSCFMQSVFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKE
Sbjct: 61  FNYQSCFMQSVFDHFPEILFIHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKE 120

Query: 121 DTEGLAQMFQVFKKFNPAWERVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAK 180
           DTEGLAQMFQVFKKFNPAWERVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAK
Sbjct: 121 DTEGLAQMFQVFKKFNPAWERVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAK 180

Query: 181 FYQLSLERPVERLLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIW 240
           FYQLSLERPVERLLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIW
Sbjct: 181 FYQLSLERPVERLLLTSLQSTMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIW 240

Query: 241 LAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKANFNQGL 300
           LAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKANFNQGL
Sbjct: 241 LAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKANFNQGL 300

Query: 301 CAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTHLIGSGS 360
           CAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTHLIGSGS
Sbjct: 301 CAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTHLIGSGS 360

Query: 361 EKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQPDMLPAQWTAG 420
           EKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQPDMLPAQWTAG
Sbjct: 361 EKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQPDMLPAQWTAG 420

Query: 421 CATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPY 480
           CATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPY
Sbjct: 421 CATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKEEFERRYSTLRELADSWIGPY 480

Query: 481 EQVQL 485
           EQVQL
Sbjct: 481 EQVQL 485


>gi|57863255 zinc finger, SWIM domain containing 3 [Homo sapiens]
          Length = 696

 Score =  197 bits (502), Expect = 1e-50
 Identities = 139/505 (27%), Positives = 232/505 (45%), Gaps = 48/505 (9%)

Query: 21  GIWTAPISPMALTMLNGLLIKDSSPPMLLHQVNKTAQLDTFNYQSCFMQSVFDHFPEILF 80
           GI  + ++ +A  M N L + + S  M    V  +  LD  ++QS  M  +F  FPE L 
Sbjct: 165 GITPSDLAKIAKVMKNFLKVDEGS--MASFSVGDSQHLDRLSFQSSKMTDLFIRFPENLL 222

Query: 81  IHRTYNPRGKVLYTFLVDGPRVQLEGHLARAVYFAIPAKEDTEGLAQMFQVFKKFNPAWE 140
           +HR  N +G +LY FLV+    +     +R V+FA+   E    +A+M  +F +FN  W 
Sbjct: 223 LHRVENTQGHILYAFLVENKERE-----SRVVHFAVLKAETVTSVAKMLSIFTEFNSDWP 277

Query: 141 RVCTILVDPHFLPLPILAMEFPTAEVLLSAFHICKFLQAKFYQLSLERPVERLLLTSLQS 200
           +V  + VDP F    IL   FP A +LLS +H  + L+ K ++ S     +RL+  +L+ 
Sbjct: 278 KVKVVFVDPSFHYRAILQEIFPAARILLSIYHTTRLLEKKLHRSSANPSFKRLMKEALRE 337

Query: 201 TMCSATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIWLAHRWRSRAESSHYFQSLEV 260
            +   +  +L+ L  +    +       L +HW   + +W  H  +     + Y  SL++
Sbjct: 338 AVFVTSEASLKNLCQMSQAVLDEDLFNFLQAHWFTCELLWYMHVRKGLLACNTYMDSLDI 397

Query: 261 TTHILSQFFGTTPS---------------EKQGMASL-------FRYMQQNSADKANFNQ 298
            T  +S  F    S                 +G+ +L        R    +   K+    
Sbjct: 398 VTSKVSSLFREQQSLLDCILCFVDYIDFFNTKGLKNLPTPPPKLKRARPASMPLKSKKAF 457

Query: 299 GLCAQN--NHAPSDTIPESPKLEQLVESHIQHS-------LNAICTGPAAQLCLGELAVV 349
           G+C ++  +    +T P++ +++   +S +  S       L+   +  A +LC  E  VV
Sbjct: 458 GICGESLTSLPAEETKPDAQQVQVQQQSQVPPSQVGMLDTLHQSGSELAYKLCHNEWEVV 517

Query: 350 QKSTHLIGSGSEKMNIQILEDTHKVQPQPPASCSCYFNQAFHLPCRHILAMLSARRQVLQ 409
           Q STHL+      +++Q+LED+H+V  +   SCSC F Q +HLPCRHILA+L   +Q + 
Sbjct: 518 QNSTHLVDMAGSSVDVQLLEDSHQVS-KDGCSCSCSFQQWYHLPCRHILALLHTSQQPVG 576

Query: 410 PDMLPAQWTA---------GCATSLDSILGSKWSETLDKHLAVTHLTEEVGQLLQHCTKE 460
             M+  +W           G       +  +   E   ++  +  L+ E+  LL      
Sbjct: 577 EAMVCRRWQKKYQYLLGPNGELQDRGMVPNTGQPEKQGRNDMIQDLSRELANLLMQTEGP 636

Query: 461 EFERRYSTLRELADSWIGPYEQVQL 485
           E E RYSTLR++ D W GP +  +L
Sbjct: 637 ELEERYSTLRKIVDIWAGPSQPSEL 661


>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
            sapiens]
          Length = 1939

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 48/209 (22%), Positives = 87/209 (41%), Gaps = 8/209 (3%)

Query: 177  LQAKFYQLSLERPVERLLLTSLQSTM--CSATAGNLRKLYTLLSNCIPPAKLPELHSHWL 234
            LQ    +L  E+   ++ +  L S M   S   GNL K+   L + +   K  E     L
Sbjct: 1214 LQRVKQKLEKEKSEMKMEIDDLASNMETVSKAKGNLEKMCRALEDQLSEIKTKEEEQQRL 1273

Query: 235  LNDRIWLAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKA 294
            +ND    A R R + ES  Y + L+    ++SQ      +  Q +  L R +++    K+
Sbjct: 1274 IND--LTAQRARLQTESGEYSRQLDEKDTLVSQLSRGKQAFTQQIEELKRQLEEEIKAKS 1331

Query: 295  NFNQGLCAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTH 354
                 L  Q++    D + E  + EQ  ++ +Q +++   +  A      E   +Q++  
Sbjct: 1332 ALAHAL--QSSRHDCDLLREQYEEEQEAKAELQRAMSKANSEVAQWRTKYETDAIQRTEE 1389

Query: 355  LIGSGSEKMNIQILEDTHKVQPQPPASCS 383
            L    ++K   Q L+D  +      A C+
Sbjct: 1390 L--EEAKKKLAQRLQDAEEHVEAVNAKCA 1416


>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 177  LQAKFYQLSLERPVERLLLTSLQSTM--CSATAGNLRKLYTLLSNCIPPAKLPELHSHWL 234
            LQ    +L  E+   ++ +  L S +   S   GNL K+   L + +   K  E     L
Sbjct: 1216 LQRVKQKLEKEKSEMKMEIDDLASNVETVSKAKGNLEKMCRTLEDQLSELKSKEEEQQRL 1275

Query: 235  LNDRIWLAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKA 294
            +ND    A R R + ES  + + L+    ++SQ      +  Q +  L R +++    K 
Sbjct: 1276 IND--LTAQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAFTQQIEELKRQLEEEIKAKN 1333

Query: 295  NFNQGLCAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTH 354
                 L  Q++    D + E  + EQ  ++ +Q +L+   T  A      E   +Q++  
Sbjct: 1334 ALAHAL--QSSRHDCDLLREQYEEEQESKAELQRALSKANTEVAQWRTKYETDAIQRTEE 1391

Query: 355  L 355
            L
Sbjct: 1392 L 1392


>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 36.6 bits (83), Expect = 0.053
 Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 6/181 (3%)

Query: 177  LQAKFYQLSLERPVERLLLTSLQSTM--CSATAGNLRKLYTLLSNCIPPAKLPELHSHWL 234
            LQ    +L  E+   ++ +  L S +   S   GNL K+   L + +   K  E     L
Sbjct: 1216 LQRVKQKLEKEKSEMKMEIDDLASNVETVSKAKGNLEKMCRTLEDQLSELKSKEEEQQRL 1275

Query: 235  LNDRIWLAHRWRSRAESSHYFQSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSADKA 294
            +ND    A R R + ES  + + L+    ++SQ      +  Q +  L R +++    K 
Sbjct: 1276 IND--LTAQRGRLQTESGEFSRQLDEKEALVSQLSRGKQAFTQQIEELKRQLEEEIKAKN 1333

Query: 295  NFNQGLCAQNNHAPSDTIPESPKLEQLVESHIQHSLNAICTGPAAQLCLGELAVVQKSTH 354
                 L  Q++    D + E  + EQ  ++ +Q +L+   T  A      E   +Q++  
Sbjct: 1334 ALAHAL--QSSRHDCDLLREQYEEEQESKAELQRALSKANTEVAQWRTKYETDAIQRTEE 1391

Query: 355  L 355
            L
Sbjct: 1392 L 1392


>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [Homo
            sapiens]
          Length = 1937

 Score = 35.8 bits (81), Expect = 0.090
 Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 6/180 (3%)

Query: 204  SATAGNLRKLYTLLSNCIPPAKLPELHSHWLLNDRIWLAHRWRSRAESSHYFQSLEVTTH 263
            S   GNL K+   L + +   K  E     L+ND    A R R + E+  Y + L+    
Sbjct: 1242 SKAKGNLEKMCRSLEDQVSELKTKEEEQQRLIND--LTAQRARLQTEAGEYSRQLDEKDA 1299

Query: 264  ILSQFFGTTPSEKQGMASLFRYMQQNSADKANFNQGLCAQNNHAPSDTIPESPKLEQLVE 323
            ++SQ   +  +  Q +  L   +++ +  K      L  Q++    D + E  + EQ  +
Sbjct: 1300 LVSQLSRSKQASTQQIEELKHQLEEETKAKNALAHAL--QSSRHDCDLLREQYEEEQEGK 1357

Query: 324  SHIQHSLNAICTGPAAQLCLGELAVVQKSTHLIGSGSEKMNIQILEDTHKVQPQPPASCS 383
            + +Q +L+   +  A      E   +Q++  L    ++K   Q L++  +      A C+
Sbjct: 1358 AELQRALSKANSEVAQWRTKYETDAIQRTEEL--EEAKKKLAQRLQEAEEHVEAVNAKCA 1415


>gi|217330658 hypothetical protein LOC9812 [Homo sapiens]
          Length = 515

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 256 QSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSA---DKANFNQGLCAQNNHAPSDTI 312
           Q  +++  I   F GT   +     + F Y Q+ +A    KA +N GLC ++       I
Sbjct: 238 QLFQLSVSIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDI 297

Query: 313 PESPKLEQLVESHIQHSL 330
            ++    QL  S   HSL
Sbjct: 298 SKAVLYYQLAASQ-GHSL 314


>gi|217330656 hypothetical protein LOC9812 [Homo sapiens]
          Length = 515

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 256 QSLEVTTHILSQFFGTTPSEKQGMASLFRYMQQNSA---DKANFNQGLCAQNNHAPSDTI 312
           Q  +++  I   F GT   +     + F Y Q+ +A    KA +N GLC ++       I
Sbjct: 238 QLFQLSVSIAFNFLGTENMKSGDHTAAFSYFQKAAARGYSKAQYNAGLCHEHGRGTPRDI 297

Query: 313 PESPKLEQLVESHIQHSL 330
            ++    QL  S   HSL
Sbjct: 298 SKAVLYYQLAASQ-GHSL 314


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,430,828
Number of Sequences: 37866
Number of extensions: 854285
Number of successful extensions: 1846
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1840
Number of HSP's gapped (non-prelim): 9
length of query: 485
length of database: 18,247,518
effective HSP length: 106
effective length of query: 379
effective length of database: 14,233,722
effective search space: 5394580638
effective search space used: 5394580638
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.