Search of human proteins with 6005988

Search of human proteins with 6005988

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]       329   5e-91
gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]       288   2e-78
gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble [...   177   4e-45
gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo ...   177   4e-45
gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo ...   177   4e-45
gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]      122   2e-28
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    32   0.29 
gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 ...    30   0.66 
gi|74027276 zinc finger protein 226 isoform a [Homo sapiens]           29   1.9  
gi|74027274 zinc finger protein 226 isoform a [Homo sapiens]           29   1.9  
gi|147903292 nuclear localized factor 1 [Homo sapiens]                 28   3.3  
gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s...    27   5.6  
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]               27   9.5  

>gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]
          Length = 158

 Score =  329 bits (844), Expect = 5e-91
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA 60
           MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA
Sbjct: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA 60

Query: 61  VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120
           VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
Sbjct: 61  VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120

Query: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
Sbjct: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158


>gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]
          Length = 158

 Score =  288 bits (736), Expect = 2e-78
 Identities = 138/158 (87%), Positives = 144/158 (91%)

Query: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA 60
           MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENW +DS A S + +G  PD R 
Sbjct: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60

Query: 61  VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120
            SC++ HGI  +H ARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
Sbjct: 61  QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120

Query: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
Sbjct: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158


>gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble
           [Homo sapiens]
          Length = 134

 Score =  177 bits (448), Expect = 4e-45
 Identities = 86/106 (81%), Positives = 89/106 (83%)

Query: 53  GRSPDPRAVSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
           G  PD R  S    HGI  +H ARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 29  GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 88

Query: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 89  KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134


>gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo
           sapiens]
          Length = 215

 Score =  177 bits (448), Expect = 4e-45
 Identities = 86/106 (81%), Positives = 89/106 (83%)

Query: 53  GRSPDPRAVSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
           G  PD R  S    HGI  +H ARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 110 GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 169

Query: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 170 KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 215


>gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo
           sapiens]
          Length = 134

 Score =  177 bits (448), Expect = 4e-45
 Identities = 86/106 (81%), Positives = 89/106 (83%)

Query: 53  GRSPDPRAVSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
           G  PD R  S    HGI  +H ARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 29  GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 88

Query: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 89  KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134


>gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]
          Length = 112

 Score =  122 bits (305), Expect = 2e-28
 Identities = 61/95 (64%), Positives = 69/95 (72%), Gaps = 2/95 (2%)

Query: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA 60
          MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENW +DS A S + +G  PD R 
Sbjct: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60

Query: 61 VSCLRNHGIHTAHKARQITKEDFATFDYILCMDES 95
           SC++ HGI  +H ARQ+   D      +LC   S
Sbjct: 61 QSCMKRHGIPMSHVARQVPSLDLKL--CVLCFSGS 93


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 92   MDESNLRDLNRKSNQVKTCKAKIELLGS-YDPQKQL---IIEDPYYGND--SDFETVYQQ 145
            +D  NLRDL+  S +      +++LLG+ Y   KQ+    I++P   N   S  E ++++
Sbjct: 964  IDLLNLRDLSNGSEEDNLPNTQLDLLGNDYLVSKQVKEYRIQEPNRENSFHSSIEAIWEE 1023

Query: 146  CVRCCRAFLEKAH 158
            C    +A  +K+H
Sbjct: 1024 CKEIVKASSKKSH 1036


>gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2
           [Homo sapiens]
          Length = 1235

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 13/50 (26%), Positives = 30/50 (60%)

Query: 80  KEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIE 129
           KE+ A  +  L +D  +++ +N +  ++K CK  I+++ +  PQ + +I+
Sbjct: 561 KEERAEPETFLALDYLDIKPINERLRELKGCKMVIDVIKTQFPQLKKVIQ 610


>gi|74027276 zinc finger protein 226 isoform a [Homo sapiens]
          Length = 803

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 61  VSCLRNHGIHTAHKARQITKEDFATFDY--ILCMDESNLRDLNRKSNQVKTCKAKIELLG 118
           +  + +H  H  HK+ +  + +    D   IL  D +++    +KS Q   CK     L 
Sbjct: 206 IGWISHHDGHRVHKSEKSYRPNDYEKDNMKILTFDHNSMIHTGQKSYQCNECKKPFSDLS 265

Query: 119 SYDPQKQL 126
           S+D  +QL
Sbjct: 266 SFDLHQQL 273


>gi|74027274 zinc finger protein 226 isoform a [Homo sapiens]
          Length = 803

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 61  VSCLRNHGIHTAHKARQITKEDFATFDY--ILCMDESNLRDLNRKSNQVKTCKAKIELLG 118
           +  + +H  H  HK+ +  + +    D   IL  D +++    +KS Q   CK     L 
Sbjct: 206 IGWISHHDGHRVHKSEKSYRPNDYEKDNMKILTFDHNSMIHTGQKSYQCNECKKPFSDLS 265

Query: 119 SYDPQKQL 126
           S+D  +QL
Sbjct: 266 SFDLHQQL 273


>gi|147903292 nuclear localized factor 1 [Homo sapiens]
          Length = 369

 Score = 28.1 bits (61), Expect = 3.3
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 53  GRSPDPRAVSC-----LRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQV 107
           G +P PRAVSC     LR  G      +  + +   A+FD   C D  +  ++ R + +V
Sbjct: 282 GGAPGPRAVSCRLSLVLRPPGTALRQCSTVVGRSRKASFDQDFCFDGLSEDEVRRLAVRV 341

Query: 108 K 108
           K
Sbjct: 342 K 342


>gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo
           sapiens]
          Length = 877

 Score = 27.3 bits (59), Expect = 5.6
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 48  SDWNVGRSPDPRAVSC-LRNHGIHTA 72
           SDW+   SP+P A+SC L NH   T+
Sbjct: 848 SDWSSKVSPEPPAISCILGNHAQDTS 873


>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
          Length = 1860

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 38   ENWVIDSGAVSDWNVGRSPDPRAVSCLRNHGIHTAHKARQITKEDFA 84
            E  ++D     D N+G S D   VSC   HG  T  K    +K +FA
Sbjct: 1697 EQKMVDGTYWVDPNLGCSSDTIEVSCNFTHGGQTCLKPITASKVEFA 1743


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,118,831
Number of Sequences: 37866
Number of extensions: 241844
Number of successful extensions: 527
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 13
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.