Search of human proteins with 58219032

Search of human proteins with 58219032

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58219032 hypothetical protein LOC389766 [Homo sapiens]
         (101 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58219032 hypothetical protein LOC389766 [Homo sapiens]             206   3e-54
gi|4505931 DNA-directed DNA polymerase beta [Homo sapiens]             30   0.31 
gi|4505021 low density lipoprotein receptor-related protein asso...    30   0.54 
gi|191252801 WDFY family member 4 [Homo sapiens]                       27   4.5  
gi|157388967 coiled-coil domain containing 87 [Homo sapiens]           27   4.5  
gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]          26   7.7  

>gi|58219032 hypothetical protein LOC389766 [Homo sapiens]
          Length = 101

 Score =  206 bits (524), Expect = 3e-54
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 1   MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARN 60
           MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARN
Sbjct: 1   MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARN 60

Query: 61  LNVMSFTRGADVRGDLQPVISVNKMNKPGKHRKTPSPKINK 101
           LNVMSFTRGADVRGDLQPVISVNKMNKPGKHRKTPSPKINK
Sbjct: 61  LNVMSFTRGADVRGDLQPVISVNKMNKPGKHRKTPSPKINK 101


>gi|4505931 DNA-directed DNA polymerase beta [Homo sapiens]
          Length = 335

 Score = 30.4 bits (67), Expect = 0.31
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 32  NFNKESKKSNLLKMHGISLNEAQEVLARNLNVM--SFTRGADVRGDLQPVIS 81
           +F K   +  +L+M  I LNE ++V +  +  +  SF RGA+  GD+  +++
Sbjct: 145 DFEKRIPREEMLQMQDIVLNEVKKVDSEYIATVCGSFRRGAESSGDMDVLLT 196


>gi|4505021 low density lipoprotein receptor-related protein
           associated protein 1 precursor [Homo sapiens]
          Length = 357

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 18  LPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEV-LARNLNVMSFTRGADVRGDL 76
           LP   L EL+A ++   ++      LK+ G+  +  +E  L RNLNV+    G D + D 
Sbjct: 71  LPPVRLAELHADLKIQERDELAWKKLKLDGLDEDGEKEARLIRNLNVILAKYGLDGKKDA 130

Query: 77  QPVIS 81
           + V S
Sbjct: 131 RQVTS 135


>gi|191252801 WDFY family member 4 [Homo sapiens]
          Length = 3184

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)

Query: 14   REATLPQCSLPELYACIENFNKESKK--SNLLKMH 46
            R+A  P+C   +  +CIEN+ +  ++  ++L K H
Sbjct: 2211 RQAKDPECKTEDFVSCIENYRRRGQELYASLYKDH 2245


>gi|157388967 coiled-coil domain containing 87 [Homo sapiens]
          Length = 849

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 14  REATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARNLNVM 64
           REA L +    E  A   N N+  KK+NL   H +  N+ +  L R LN+M
Sbjct: 731 REALLARLEWFEGQA--SNPNRFFKKTNLSSSHFLEENQVRSHLHRKLNLM 779


>gi|19913408 DNA topoisomerase II, beta isozyme [Homo sapiens]
          Length = 1621

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 69   GADVRGD----LQPVISVNKMNKPGKHRKTPSPKINK 101
            GA V G     L P + +NK  KP + +K P  ++ K
Sbjct: 1275 GAPVEGAGEEALTPSVPINKGPKPKREKKEPGTRVRK 1311


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.129    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,043,657
Number of Sequences: 37866
Number of extensions: 142606
Number of successful extensions: 277
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 6
length of query: 101
length of database: 18,247,518
effective HSP length: 72
effective length of query: 29
effective length of database: 15,521,166
effective search space: 450113814
effective search space used: 450113814
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.