Search of human proteins with 5803187

Search of human proteins with 5803187

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5803187 transaldolase 1 [Homo sapiens]
         (337 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5803187 transaldolase 1 [Homo sapiens]                             660   0.0  
gi|4504191 mutS homolog 6 [Homo sapiens]                               30   4.0  
gi|47458825 hypothetical protein LOC144577 [Homo sapiens]              29   5.2  
gi|72534838 sorting nexin 6B [Homo sapiens]                            29   5.2  
gi|21686971 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-ace...    28   8.9  
gi|4507285 syntaxin 10 [Homo sapiens]                                  28   8.9  

>gi|5803187 transaldolase 1 [Homo sapiens]
          Length = 337

 Score =  660 bits (1702), Expect = 0.0
 Identities = 337/337 (100%), Positives = 337/337 (100%)

Query: 1   MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQE 60
           MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQE
Sbjct: 1   MSSSPVKRQRMESALDQLKQFTTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQE 60

Query: 61  LVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVA 120
           LVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVA
Sbjct: 61  LVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLSFDKDAMVA 120

Query: 121 RARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAE 180
           RARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAE
Sbjct: 121 RARRLIELYKEAGISKDRILIKLSSTWEGIQAGKELEEQHGIHCNMTLLFSFAQAVACAE 180

Query: 181 AGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRN 240
           AGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRN
Sbjct: 181 AGVTLISPFVGRILDWHVANTDKKSYEPLEDPGVKSVTKIYNYYKKFSYKTIVMGASFRN 240

Query: 241 TGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNE 300
           TGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNE
Sbjct: 241 TGEIKALAGCDFLTISPKLLGELLQDNAKLVPVLSAKAAQASDLEKIHLDEKSFRWLHNE 300

Query: 301 DQMAVEKLSDGIRKFAADAVKLERMLTERMFNAENGK 337
           DQMAVEKLSDGIRKFAADAVKLERMLTERMFNAENGK
Sbjct: 301 DQMAVEKLSDGIRKFAADAVKLERMLTERMFNAENGK 337


>gi|4504191 mutS homolog 6 [Homo sapiens]
          Length = 1360

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 35  DEYKPQDATTNPSLILAAAQMPAYQELVEEAIA------YGRKLGGSQEDQIKNAIDKLF 88
           +EY P D+ T  +    A    AYQ +V +A+       +     GS E  +   +D   
Sbjct: 707 EEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCH 766

Query: 89  VLFGAEILKK---IPGRVSTEVDARLSFDKDAMVA--RARRLIELYKEAGISKDRILIKL 143
             FG  +LK+    P      ++ RL   +D MV   +   ++EL K+     +R+L K+
Sbjct: 767 TPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVPDKISEVVELLKKLP-DLERLLSKI 825


>gi|47458825 hypothetical protein LOC144577 [Homo sapiens]
          Length = 445

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 47  SLILAAAQMPAYQELVEEAIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGR 102
           SL+ A A + A +++       G+KLGG      K++I  ++     E+ K + GR
Sbjct: 53  SLLAALAHLAAAEKVYHSLTYLGQKLGGQSFFSRKDSIRTIYTSLHNELKKVVTGR 108


>gi|72534838 sorting nexin 6B [Homo sapiens]
          Length = 403

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 14/78 (17%)

Query: 72  LGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVDARLS-----------FDKDAMVA 120
           LG  + +Q++ +  KL  LF  E L+K+ GRV+++ D +LS             KD +  
Sbjct: 252 LGTQEVNQLRTSFLKLAELF--ERLRKLEGRVASDEDLKLSDMLRYYMRDSQAAKDLLYR 309

Query: 121 RARRLIELYKEAGISKDR 138
           R R L + Y+ A  + D+
Sbjct: 310 RLRALAD-YENANKALDK 326


>gi|21686971 UDP-N-acetyl-alpha-D-galactosamine:polypeptide
           N-acetylgalactosaminyltransferase-like 5 [Homo sapiens]
          Length = 443

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)

Query: 197 HVANTDKKSYEPLE--DPGVKSVTKIYNYYKKFSYKTIVMGASFRNTGEIKALAGCDFLT 254
           HV++  KKS EPL    PG K   +I    ++     +++  +  +  + K++ G DF  
Sbjct: 31  HVSSWQKKSQEPLSAWSPGKKVHQQIIYGSEQIPKPHVIVKRT--DEDKAKSMLGTDFNH 88

Query: 255 ISPKLLGELLQ 265
            +P+L  ELL+
Sbjct: 89  TNPELHKELLK 99


>gi|4507285 syntaxin 10 [Homo sapiens]
          Length = 249

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 11/104 (10%)

Query: 9   QRMESALDQLKQF----TTVVADTGDFHAIDEYKPQDATTNPSLILAAAQMPAYQELVEE 64
           +RM  A+ ++K      T V     +   I   KP  A  +PS +L A+ + A    +EE
Sbjct: 93  ERMREAVQEMKDHMVSPTAVAFLERNNREILAGKPA-AQKSPSDLLDASAVSATSRYIEE 151

Query: 65  AIAYGRKLGGSQEDQIKNAIDKLFVLFGAEILKKIPGRVSTEVD 108
             A  + +   Q+ Q++       V    ++LK + GRV  E+D
Sbjct: 152 QQATQQLIMDEQDQQLE------MVSGSIQVLKHMSGRVGEELD 189


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,999,506
Number of Sequences: 37866
Number of extensions: 437297
Number of successful extensions: 955
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 953
Number of HSP's gapped (non-prelim): 6
length of query: 337
length of database: 18,247,518
effective HSP length: 103
effective length of query: 234
effective length of database: 14,347,320
effective search space: 3357272880
effective search space used: 3357272880
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.