Search of human proteins with 5802988

Search of human proteins with 5802988

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5802988 B-cell translocation gene 2 [Homo sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5802988 B-cell translocation gene 2 [Homo sapiens]                 322   6e-89
gi|4502473 B-cell translocation protein 1 [Homo sapiens]              211   2e-55
gi|5032187 transducer of ERBB2, 1 [Homo sapiens]                      106   7e-24
gi|7706739 transducer of ERBB2, 2 [Homo sapiens]                      102   1e-22
gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens]       88   3e-18
gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens]      84   5e-17
gi|8923958 B-cell translocation gene 4 [Homo sapiens]                  84   5e-17
gi|13376737 coenzyme Q10 homolog B [Homo sapiens]                      30   1.1  
gi|14149740 oxysterol-binding protein-like protein 5 isoform a [...    29   1.9  
gi|38348394 RNA binding motif protein 43 [Homo sapiens]                28   4.3  
gi|109150407 kelch-like 6 [Homo sapiens]                               27   7.3  

>gi|5802988 B-cell translocation gene 2 [Homo sapiens]
          Length = 158

 Score =  322 bits (826), Expect = 6e-89
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS 60
           MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS
Sbjct: 1   MSHGKGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPS 60

Query: 61  KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC 120
           KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC
Sbjct: 61  KGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSIC 120

Query: 121 VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS 158
           VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS
Sbjct: 121 VLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMAVSS 158


>gi|4502473 B-cell translocation protein 1 [Homo sapiens]
          Length = 171

 Score =  211 bits (537), Expect = 2e-55
 Identities = 103/164 (62%), Positives = 122/164 (74%), Gaps = 10/164 (6%)

Query: 5   KGTDMLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSG 64
           +   M+ EIAAAV F+S  LRT+G  SE++L+ FS +LQE L EHYKHHWFPEKP KGSG
Sbjct: 7   RAATMIGEIAAAVSFISKFLRTKGLTSERQLQTFSQSLQELLAEHYKHHWFPEKPCKGSG 66

Query: 65  YRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVLYE 124
           YRCIRINHKMDP+I + A +IGLS  +L +LLPSELTLWVDPYEVSYRIGEDGSICVLYE
Sbjct: 67  YRCIRINHKMDPLIGQAAQRIGLSSQELFRLLPSELTLWVDPYEVSYRIGEDGSICVLYE 126

Query: 125 EAPLAASC----------GLLTCKNQVLLGRSSPSKNYVMAVSS 158
            +P   S             ++CK ++LLGR+SPSKNY M   S
Sbjct: 127 ASPAGGSTQNSTNVQMVDSRISCKEELLLGRTSPSKNYNMMTVS 170


>gi|5032187 transducer of ERBB2, 1 [Homo sapiens]
          Length = 345

 Score =  106 bits (265), Expect = 7e-24
 Identities = 50/123 (40%), Positives = 76/123 (61%), Gaps = 2/123 (1%)

Query: 12  EIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRIN 71
           EI  A+ F+ S L  +  +  +R+ +F   L+  L + Y+ HW+PEKP KGSG+RCI I 
Sbjct: 4   EIQVALNFIISYLYNK--LPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIG 61

Query: 72  HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVLYEEAPLAAS 131
            K+DP+I + + + GL    +   LP +L++W+DP+EVSY+IGE G + VLY +      
Sbjct: 62  EKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVDDNNENG 121

Query: 132 CGL 134
           C L
Sbjct: 122 CEL 124


>gi|7706739 transducer of ERBB2, 2 [Homo sapiens]
          Length = 344

 Score =  102 bits (255), Expect = 1e-22
 Identities = 46/112 (41%), Positives = 72/112 (64%), Gaps = 2/112 (1%)

Query: 12  EIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCIRIN 71
           EI  A+ F+ S L  +  +  +R  +F   L+  L + Y+ HW+PEKP KGSG+RC+ I 
Sbjct: 4   EIKVALNFIISYLYNK--LPRRRADLFGEELERLLKKKYEGHWYPEKPLKGSGFRCVHIG 61

Query: 72  HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVLY 123
             +DP++   A + GL+   +   +P EL++W+DP+EVSY+IGE G++ VLY
Sbjct: 62  EMVDPVVELAAKRSGLAVEDVRANVPEELSVWIDPFEVSYQIGEKGAVKVLY 113


>gi|28872722 B-cell translocation gene 3 isoform b [Homo sapiens]
          Length = 252

 Score = 88.2 bits (217), Expect = 3e-18
 Identities = 48/116 (41%), Positives = 67/116 (57%), Gaps = 4/116 (3%)

Query: 9   MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCI 68
           M  EIAA V F + L+R    + ++ ++ F+  L   L E YK+HW+PEKPSKG  YRCI
Sbjct: 1   MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60

Query: 69  RIN--HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGEDGSICVL 122
           R+N   ++DP + +      +    L   LP ELTLWVDP EV  R GE  +  ++
Sbjct: 61  RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCRYGEKNNAFIV 114


>gi|195963406 B-cell translocation gene 3 isoform a [Homo sapiens]
          Length = 296

 Score = 84.0 bits (206), Expect = 5e-17
 Identities = 46/106 (43%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 9   MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCI 68
           M  EIAA V F + L+R    + ++ ++ F+  L   L E YK+HW+PEKPSKG  YRCI
Sbjct: 1   MKNEIAAVVFFFTRLVRKHDKLKKEAVERFAEKLTLILQEKYKNHWYPEKPSKGQAYRCI 60

Query: 69  RIN--HKMDPIISRVASQIGLSQPQLHQLLPSELTLWVDPYEVSYR 112
           R+N   ++DP + +      +    L   LP ELTLWVDP EV  R
Sbjct: 61  RVNKFQRVDPDVLKACENSCILYSDLG--LPKELTLWVDPCEVCCR 104


>gi|8923958 B-cell translocation gene 4 [Homo sapiens]
          Length = 223

 Score = 84.0 bits (206), Expect = 5e-17
 Identities = 47/111 (42%), Positives = 66/111 (59%), Gaps = 8/111 (7%)

Query: 9   MLPEIAAAVGFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWFPEKPSKGSGYRCI 68
           M  EIA  V F++ L++    +S+Q+++ F+  L   L E Y+ HW  + PSKG  +RCI
Sbjct: 1   MRDEIATTVFFVTRLVKKHDKLSKQQIEDFAEKLMTILFETYRSHWHSDCPSKGQAFRCI 60

Query: 69  RINHKM--DPIISR--VASQIGLSQPQLHQLLPSELTLWVDPYEVSYRIGE 115
           RIN+    DPI+ R  V S +  S    H  LP E+T+WVDP+EV  R GE
Sbjct: 61  RINNNQNKDPILERACVESNVDFS----HLGLPKEMTIWVDPFEVCCRYGE 107


>gi|13376737 coenzyme Q10 homolog B [Homo sapiens]
          Length = 238

 Score = 29.6 bits (65), Expect = 1.1
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 14/98 (14%)

Query: 7   TDMLP-EIAAAVGF--LSSLLRTRGCVSEQRLKVFSGALQEAL-----TEHYKHH--WFP 56
           T +LP EI A   F   + L+  R   SE+R+  +S  +QE        E YKH   W  
Sbjct: 52  TSILPKEICARTFFKITAPLINKRKEYSERRILGYS--MQEMYDVVSGVEDYKHFVPWCK 109

Query: 57  EKP--SKGSGYRCIRINHKMDPIISRVASQIGLSQPQL 92
           +    SK SGY   R+     P++ R  S + L +P L
Sbjct: 110 KSDVISKRSGYCKTRLEIGFPPVLERYTSVVTLVKPHL 147


>gi|14149740 oxysterol-binding protein-like protein 5 isoform a
           [Homo sapiens]
          Length = 879

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 12/67 (17%)

Query: 57  EKPSKGSGYRCIRINHKMDPIISRVASQIGLSQPQLHQLLPSELTL-----------WVD 105
           E+PSK  G+ C ++ H +D  +  V    G S   + Q LPS   +           W+D
Sbjct: 178 ERPSKKDGF-CFKLFHPLDQSVWAVKGPKGESVGSITQPLPSSYLIFRAASESDGRCWLD 236

Query: 106 PYEVSYR 112
             E++ R
Sbjct: 237 ALELALR 243


>gi|38348394 RNA binding motif protein 43 [Homo sapiens]
          Length = 357

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 10/95 (10%)

Query: 51  KHHWFPEKPSKGSGYRCIRINHKMDPIISRVASQIGLS--------QPQLHQLLPSELTL 102
           K HW   K         +R++H  D I S V + + LS        +  +  L     +L
Sbjct: 80  KKHWLARKTRHAELTVSLRVSHFGDKIFSSVNAILDLSVFGKEVTLETLVKDLKKKIPSL 139

Query: 103 WVDPYEVSYRIGEDGSICVL--YEEAPLAASCGLL 135
              P + + RI  +GS   +    E+ LA +C LL
Sbjct: 140 SFSPLKPNGRISVEGSFLAVKRLRESLLARACSLL 174


>gi|109150407 kelch-like 6 [Homo sapiens]
          Length = 621

 Score = 26.9 bits (58), Expect = 7.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 116 DGSICVLYEEAPLAASCGLLTCKNQVLLGRSSPSKNYVMA 155
           + S C++ + +   ASCG+  C N++ +      KN V+A
Sbjct: 535 EDSWCLVTQLSHERASCGIAPCNNRLYITGGRDEKNEVIA 574


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,384,479
Number of Sequences: 37866
Number of extensions: 264916
Number of successful extensions: 528
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 11
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.