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Search of human proteins with 57527756
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|57527756 hypothetical protein LOC54953 [Homo sapiens]
(454 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|57527756 hypothetical protein LOC54953 [Homo sapiens] 907 0.0
gi|16445438 bromodomain and WD repeat domain containing 1 isofor... 30 4.5
gi|16445436 bromodomain and WD repeat domain containing 1 isofor... 30 4.5
gi|109255234 centrosomal protein 290kDa [Homo sapiens] 30 5.9
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 5.9
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 5.9
gi|116686122 kinesin family member 4 [Homo sapiens] 30 5.9
gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens] 29 7.7
>gi|57527756 hypothetical protein LOC54953 [Homo sapiens]
Length = 454
Score = 907 bits (2344), Expect = 0.0
Identities = 454/454 (100%), Positives = 454/454 (100%)
Query: 1 MGRTYIVEETVGQYLSNINLQGKAFVSGLLIGQCSSQKDYVILATRTPPKEEQSENLKHP 60
MGRTYIVEETVGQYLSNINLQGKAFVSGLLIGQCSSQKDYVILATRTPPKEEQSENLKHP
Sbjct: 1 MGRTYIVEETVGQYLSNINLQGKAFVSGLLIGQCSSQKDYVILATRTPPKEEQSENLKHP 60
Query: 61 KAKLDNLDEEWATEHACQVSRMLPGGLLVLGVFIITTLELANDFQNALRRLMFAVEKSIN 120
KAKLDNLDEEWATEHACQVSRMLPGGLLVLGVFIITTLELANDFQNALRRLMFAVEKSIN
Sbjct: 61 KAKLDNLDEEWATEHACQVSRMLPGGLLVLGVFIITTLELANDFQNALRRLMFAVEKSIN 120
Query: 121 RKRLWNFTEEEVSERVTLHICASTKKIFCRTYDIHDPKSSARPADWKYQSGLSSSWLSLE 180
RKRLWNFTEEEVSERVTLHICASTKKIFCRTYDIHDPKSSARPADWKYQSGLSSSWLSLE
Sbjct: 121 RKRLWNFTEEEVSERVTLHICASTKKIFCRTYDIHDPKSSARPADWKYQSGLSSSWLSLE 180
Query: 181 CTVHINIHIPLSATSVSYTLEKNTKNGLTRWAKEIENGVYLINGQVKDEDCDLLEGQKKS 240
CTVHINIHIPLSATSVSYTLEKNTKNGLTRWAKEIENGVYLINGQVKDEDCDLLEGQKKS
Sbjct: 181 CTVHINIHIPLSATSVSYTLEKNTKNGLTRWAKEIENGVYLINGQVKDEDCDLLEGQKKS 240
Query: 241 SRGNTQATSHSFDVRVLTQLLLNSDHRSTATVQICSGSVNLKGAVKCRAYIHSSKPKVKD 300
SRGNTQATSHSFDVRVLTQLLLNSDHRSTATVQICSGSVNLKGAVKCRAYIHSSKPKVKD
Sbjct: 241 SRGNTQATSHSFDVRVLTQLLLNSDHRSTATVQICSGSVNLKGAVKCRAYIHSSKPKVKD 300
Query: 301 AVQAVKRDILNTVADRCEMLFEDLLLNEIPEKKDSEKEFHVLPYRVFVPLPGSTVMLCDY 360
AVQAVKRDILNTVADRCEMLFEDLLLNEIPEKKDSEKEFHVLPYRVFVPLPGSTVMLCDY
Sbjct: 301 AVQAVKRDILNTVADRCEMLFEDLLLNEIPEKKDSEKEFHVLPYRVFVPLPGSTVMLCDY 360
Query: 361 KFDDESAEEIRDHFMEMLDHTIQIEDLEIAEETNTACMSSSMNSQASLDNTDDEQPKQPI 420
KFDDESAEEIRDHFMEMLDHTIQIEDLEIAEETNTACMSSSMNSQASLDNTDDEQPKQPI
Sbjct: 361 KFDDESAEEIRDHFMEMLDHTIQIEDLEIAEETNTACMSSSMNSQASLDNTDDEQPKQPI 420
Query: 421 KTTMLLKIQQNIGVIAAFTVAVLAAGISFHYFSD 454
KTTMLLKIQQNIGVIAAFTVAVLAAGISFHYFSD
Sbjct: 421 KTTMLLKIQQNIGVIAAFTVAVLAAGISFHYFSD 454
>gi|16445438 bromodomain and WD repeat domain containing 1 isoform B
[Homo sapiens]
Length = 2269
Score = 30.0 bits (66), Expect = 4.5
Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 213 KEIENGVYLINGQVKDEDCDLLEGQKKSSRGNTQATSHSFDVRVLTQLLLNSDHRSTAT- 271
+ I NG L +V+D L SS ++ +S + + + L +S+ R T T
Sbjct: 1519 RPITNGSTLSESEVEDSLATSLSSSASSSSEESKESSRARESSSRSGLSRSSNLRVTRTR 1578
Query: 272 -VQICSGSVNL-----KGAVKCRAYIHSSKPKVKDAVQAVKRDILNT--VADRCEMLFED 323
Q +G V+L + A + R Y+ S + + +K N V +C + +
Sbjct: 1579 AAQRKTGPVSLANGCGRKATRKRVYLSDSDNNSLETGEILKARAGNNRKVLRKCAAVAAN 1638
Query: 324 L--LLNEIPEKKDSEK--EFHVLPYRVFVPLPGSTVMLCDYKFDDESAEEIRDHFMEMLD 379
L++++ E SE LP+R S V + E + ++
Sbjct: 1639 KIKLMSDVEENSSSESVCSGRKLPHR-----NASAVARKKLLHNSEDEQSLKS------- 1686
Query: 380 HTIQIEDLEIAEETNTACMSSSMNSQASLDNTDD 413
+IE+ E+ +E +SSS +Q+++D +++
Sbjct: 1687 ---EIEEEELKDENQLLPVSSSHTAQSNVDESEN 1717
Score = 29.3 bits (64), Expect = 7.7
Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 52/286 (18%)
Query: 114 AVEKSINRKRLWNFTEEEVSERVTLHICASTKKIFCRTYDIHDPKSSARPADWKYQSGLS 173
+ E S RKR T + +T + + K S+R + +SGLS
Sbjct: 1508 SAESSERRKRNRPITNGSTLSESEVEDSLATSLSSSASSSSEESKESSRARESSSRSGLS 1567
Query: 174 SSWLSLECTVHINIHIPLSATSVSYTLEKNTKNGLTRWAKEIENGVYLINGQVKDEDCDL 233
S N+ + + + T + NG R K VYL D D +
Sbjct: 1568 RS---------SNLRVTRTRAAQRKTGPVSLANGCGR--KATRKRVYL-----SDSDNNS 1611
Query: 234 LEGQK--KSSRGNTQATSHSFDVRVLTQLLLNSD-HRSTATVQICSGSV---NLKGAVKC 287
LE + K+ GN + ++ L SD ++++ +CSG AV
Sbjct: 1612 LETGEILKARAGNNRKVLRKCAAVAANKIKLMSDVEENSSSESVCSGRKLPHRNASAVAR 1671
Query: 288 RAYIHSSKPKVKDAVQAVKRDILNTVADRCEMLFEDLLLN-----------EIPEKKDSE 336
+ +H+S+ + Q++K +I + E+ E+ LL + E +DSE
Sbjct: 1672 KKLLHNSEDE-----QSLKSEI-----EEEELKDENQLLPVSSSHTAQSNVDESENRDSE 1721
Query: 337 KE---------FHVLPYRVFVPLPGSTVMLCDYKFDDESAEEIRDH 373
E +H Y+ P P T L +++S DH
Sbjct: 1722 SESDLRVARKNWHANGYKSHTPAPSKTKFLKIESSEEDSKSHDSDH 1767
>gi|16445436 bromodomain and WD repeat domain containing 1 isoform A
[Homo sapiens]
Length = 2320
Score = 30.0 bits (66), Expect = 4.5
Identities = 46/214 (21%), Positives = 89/214 (41%), Gaps = 28/214 (13%)
Query: 213 KEIENGVYLINGQVKDEDCDLLEGQKKSSRGNTQATSHSFDVRVLTQLLLNSDHRSTAT- 271
+ I NG L +V+D L SS ++ +S + + + L +S+ R T T
Sbjct: 1519 RPITNGSTLSESEVEDSLATSLSSSASSSSEESKESSRARESSSRSGLSRSSNLRVTRTR 1578
Query: 272 -VQICSGSVNL-----KGAVKCRAYIHSSKPKVKDAVQAVKRDILNT--VADRCEMLFED 323
Q +G V+L + A + R Y+ S + + +K N V +C + +
Sbjct: 1579 AAQRKTGPVSLANGCGRKATRKRVYLSDSDNNSLETGEILKARAGNNRKVLRKCAAVAAN 1638
Query: 324 L--LLNEIPEKKDSEK--EFHVLPYRVFVPLPGSTVMLCDYKFDDESAEEIRDHFMEMLD 379
L++++ E SE LP+R S V + E + ++
Sbjct: 1639 KIKLMSDVEENSSSESVCSGRKLPHR-----NASAVARKKLLHNSEDEQSLKS------- 1686
Query: 380 HTIQIEDLEIAEETNTACMSSSMNSQASLDNTDD 413
+IE+ E+ +E +SSS +Q+++D +++
Sbjct: 1687 ---EIEEEELKDENQLLPVSSSHTAQSNVDESEN 1717
Score = 29.3 bits (64), Expect = 7.7
Identities = 62/286 (21%), Positives = 104/286 (36%), Gaps = 52/286 (18%)
Query: 114 AVEKSINRKRLWNFTEEEVSERVTLHICASTKKIFCRTYDIHDPKSSARPADWKYQSGLS 173
+ E S RKR T + +T + + K S+R + +SGLS
Sbjct: 1508 SAESSERRKRNRPITNGSTLSESEVEDSLATSLSSSASSSSEESKESSRARESSSRSGLS 1567
Query: 174 SSWLSLECTVHINIHIPLSATSVSYTLEKNTKNGLTRWAKEIENGVYLINGQVKDEDCDL 233
S N+ + + + T + NG R K VYL D D +
Sbjct: 1568 RS---------SNLRVTRTRAAQRKTGPVSLANGCGR--KATRKRVYL-----SDSDNNS 1611
Query: 234 LEGQK--KSSRGNTQATSHSFDVRVLTQLLLNSD-HRSTATVQICSGSV---NLKGAVKC 287
LE + K+ GN + ++ L SD ++++ +CSG AV
Sbjct: 1612 LETGEILKARAGNNRKVLRKCAAVAANKIKLMSDVEENSSSESVCSGRKLPHRNASAVAR 1671
Query: 288 RAYIHSSKPKVKDAVQAVKRDILNTVADRCEMLFEDLLLN-----------EIPEKKDSE 336
+ +H+S+ + Q++K +I + E+ E+ LL + E +DSE
Sbjct: 1672 KKLLHNSEDE-----QSLKSEI-----EEEELKDENQLLPVSSSHTAQSNVDESENRDSE 1721
Query: 337 KE---------FHVLPYRVFVPLPGSTVMLCDYKFDDESAEEIRDH 373
E +H Y+ P P T L +++S DH
Sbjct: 1722 SESDLRVARKNWHANGYKSHTPAPSKTKFLKIESSEEDSKSHDSDH 1767
>gi|109255234 centrosomal protein 290kDa [Homo sapiens]
Length = 2479
Score = 29.6 bits (65), Expect = 5.9
Identities = 26/133 (19%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 195 SVSYTLEKNTKNGLTRWAKEIENGVYLINGQVKDEDC--DLLEGQKKSSRGNTQATSHSF 252
++ L++N ++ + + E+E+ YL++ K+ C L+ QK+++ T +
Sbjct: 1667 NIKLQLQENHEDEVKKVKAEVEDLKYLLDQSQKESQCLKSELQAQKEANSRAPTTTMRNL 1726
Query: 253 DVRVLTQLLLNSDHRSTATVQICSGSVNLKGAVKCRAYIHSSKPKVKDAVQAVKRDILNT 312
R+ +QL L + + + + A + R +S+ + VQ +
Sbjct: 1727 VERLKSQLALKEKQQKALSRALLELRAEMTAAAEERIISATSQKEAHLNVQQIVDRHTRE 1786
Query: 313 VADRCEMLFEDLL 325
+ + E L E+LL
Sbjct: 1787 LKTQVEDLNENLL 1799
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 346 VFVPLPGSTVMLCDYKFDDESAEEIRDHFMEMLDHTIQ------IEDLEIAEETNTACMS 399
V PL ++M DY S E D + ++L+H +Q D E+ +++C+
Sbjct: 1094 VLRPLQEESIMEKDYSASINSLLERYDTYRDILEHHLQNNKFRITSDFSSEEDRSSSCLQ 1153
Query: 400 SSMNSQASLDNTDDEQPKQ 418
+ + + N D + K+
Sbjct: 1154 AKLTDLQVIKNETDARWKE 1172
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 29.6 bits (65), Expect = 5.9
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 346 VFVPLPGSTVMLCDYKFDDESAEEIRDHFMEMLDHTIQ------IEDLEIAEETNTACMS 399
V PL ++M DY S E D + ++L+H +Q D E+ +++C+
Sbjct: 1094 VLRPLQEESIMEKDYSASINSLLERYDTYRDILEHHLQNNKFRITSDFSSEEDRSSSCLQ 1153
Query: 400 SSMNSQASLDNTDDEQPKQ 418
+ + + N D + K+
Sbjct: 1154 AKLTDLQVIKNETDARWKE 1172
>gi|116686122 kinesin family member 4 [Homo sapiens]
Length = 1232
Score = 29.6 bits (65), Expect = 5.9
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 350 LPGSTVMLCDYKFD----DESAEEIRDHFMEMLDHTIQIEDLEIAEETNTACMSSSMNSQ 405
LP T++ D F+ +++ F+E ++ IEDL+ C S+N
Sbjct: 1006 LPKDTLLSPDSSFEYVPPKPKPSRVKEKFLEQ---SMDIEDLKY-------CSEHSVNEH 1055
Query: 406 ASLDNTDDEQPKQPIKTTMLLKIQQ 430
D DDE + K T L+K+ +
Sbjct: 1056 EDGDGDDDEGDDEEWKPTKLVKVSR 1080
>gi|167466262 zinc finger, CCHC domain containing 16 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 7.7
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 357 LCDYKFDDESAEEIRDHFMEMLDHTIQIEDLE------IAEETNTACMSSSMNSQASLDN 410
L D D+ES ++ D+ +++ IQ++ + ET ++S + QA
Sbjct: 188 LADPNQDEESVTDMMDNLPDLITQCIQLDKKHSDRPELLQSETQLPLLASLIQHQALFSP 247
Query: 411 TDDEQPKQPIK 421
TD K PI+
Sbjct: 248 TDPPPKKGPIQ 258
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,467,202
Number of Sequences: 37866
Number of extensions: 691952
Number of successful extensions: 1982
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 16
length of query: 454
length of database: 18,247,518
effective HSP length: 106
effective length of query: 348
effective length of database: 14,233,722
effective search space: 4953335256
effective search space used: 4953335256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.