Search of human proteins with 56790287

Search of human proteins with 56790287

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|56790287 ChaC, cation transport regulator-like 2 [Homo
sapiens]
         (184 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|56790287 ChaC, cation transport regulator-like 2 [Homo sapiens]    389   e-108
gi|218563698 ChaC, cation transport regulator-like 1 isoform a [...   179   1e-45
gi|218563700 ChaC, cation transport regulator-like 1 isoform b [...   131   4e-31
gi|83035136 F-box protein 31 [Homo sapiens]                            29   2.0  
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo...    27   9.9  

>gi|56790287 ChaC, cation transport regulator-like 2 [Homo sapiens]
          Length = 184

 Score =  389 bits (998), Expect = e-108
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV 60
           MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV
Sbjct: 1   MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV 60

Query: 61  WGVAYRLPVGKEEEVKAYLDFREKGGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDYLG 120
           WGVAYRLPVGKEEEVKAYLDFREKGGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDYLG
Sbjct: 61  WGVAYRLPVGKEEEVKAYLDFREKGGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDYLG 120

Query: 121 PAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERLEGKQN 180
           PAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERLEGKQN
Sbjct: 121 PAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFALEKLVKERLEGKQN 180

Query: 181 LNCI 184
           LNCI
Sbjct: 181 LNCI 184


>gi|218563698 ChaC, cation transport regulator-like 1 isoform a
           [Homo sapiens]
          Length = 264

 Score =  179 bits (454), Expect = 1e-45
 Identities = 87/169 (51%), Positives = 107/169 (63%), Gaps = 2/169 (1%)

Query: 1   MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV 60
           +W+FGYGSL+W+ DF Y D  VG++  YSRRFWQG T HRG    PGRVVTL+ED  GC 
Sbjct: 75  LWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCT 134

Query: 61  WGVAYRLPVGKEEEVKAYLDFREK--GGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDY 118
           WGVAY++   +  +   YL+ RE   GGY T  V FYP+D   +P   L Y+ T  NP Y
Sbjct: 135 WGVAYQVQGEQVSKALKYLNVREAVLGGYDTKEVTFYPQDAPDQPLKALAYVATPQNPGY 194

Query: 119 LGPAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFAL 167
           LGPAP E IA QI    G SG N EYL  LA+ ++   P+  DEHL A+
Sbjct: 195 LGPAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAI 243


>gi|218563700 ChaC, cation transport regulator-like 1 isoform b
           [Homo sapiens]
          Length = 219

 Score =  131 bits (329), Expect = 4e-31
 Identities = 71/167 (42%), Positives = 87/167 (52%), Gaps = 43/167 (25%)

Query: 1   MWVFGYGSLIWKVDFPYQDKLVGYITNYSRRFWQGSTDHRGVPGKPGRVVTLVEDPAGCV 60
           +W+FGYGSL+W+ DF Y D  VG++  YSRRFWQG T HRG    PGRVVTL+ED  GC 
Sbjct: 75  LWIFGYGSLVWRPDFAYSDSRVGFVRGYSRRFWQGDTFHRGSDKMPGRVVTLLEDHEGCT 134

Query: 61  WGVAYRLPVGKEEEVKAYLDFREKGGYRTTTVIFYPKDPTTKPFSVLLYIGTCDNPDYLG 120
           WGVAY++  G++                                          NP YLG
Sbjct: 135 WGVAYQVQ-GEQ------------------------------------------NPGYLG 151

Query: 121 PAPLEDIAEQIFNAAGPSGRNTEYLFELANSIRNLVPEEADEHLFAL 167
           PAP E IA QI    G SG N EYL  LA+ ++   P+  DEHL A+
Sbjct: 152 PAPEEAIATQILACRGFSGHNLEYLLRLADFMQLCGPQAQDEHLAAI 198


>gi|83035136 F-box protein 31 [Homo sapiens]
          Length = 539

 Score = 29.3 bits (64), Expect = 2.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)

Query: 44  GKPGRVVTLVEDPAGCVWGVAYRLPVGKEEEVKAY 78
           G+PG  V   E PA C  G  + LPVG     + Y
Sbjct: 425 GEPGDAVAAAEQPAQCGQGQPFVLPVGVSSRNEDY 459


>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
          sapiens]
          Length = 738

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 5/26 (19%)

Query: 43 PGKPGRVVTLVEDPAGCVWGVAYRLP 68
          P +PGR++     P  CVW  A R+P
Sbjct: 17 PAEPGRLL-----PVACVWAAASRVP 37


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.141    0.446 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,201,920
Number of Sequences: 37866
Number of extensions: 390842
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 888
Number of HSP's gapped (non-prelim): 6
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.