Guide to the Human Genome
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Name: LOC136242 Sequence: fasta or formatted (235aa) NCBI GI: 56606135
Description:

hypothetical protein LOC136242

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         13           1
 C cysteine            2.6          6           1
 D aspartate           4.7         11           2
 E glutamate           3.8          9           1
 F phenylalanine       4.3         10           3
 G glycine             6.4         15           2
 H histidine           2.6          6           1
 I isoleucine          4.3         10           1
 K lysine              7.7         18           1
 L leucine             9.4         22           2
 M methionine          2.6          6           1
 N asparagine          5.1         12           1
 P proline             6.4         15           1
 Q glutamine           4.3         10           1
 R arginine            3.8          9           1
 S serine              6.4         15           2
 T threonine           4.3         10           2
 V valine             10.2         24           1
 W tryptophan          1.7          4           1
 Y tyrosine            4.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC136242 
PRSS1                 0.244   protease, serine, 1 preproprotein 
PRSS3                 0.238   mesotrypsin isoform 1 preproprotein 
PRSS3                 0.238   mesotrypsin isoform 2 preproprotein 
PRSS2                 0.231   protease, serine, 2 preproprotein 
TRYX3                 0.201   trypsin X3 
KLK6                  0.186   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.186   kallikrein-related peptidase 6 isoform A preproprotei...
KLK14                 0.162   kallikrein 14 preproprotein 
KLK15                 0.162   kallikrein-related peptidase 15 isoform 4 preproprot...
CTSG                  0.156   cathepsin G preproprotein 
KLK8                  0.151   kallikrein 8 isoform 2 
KLK8                  0.151   kallikrein 8 isoform 1 preproprotein 
KLK13                 0.145   kallikrein 13 precursor 
KLK11                 0.138   kallikrein 11 isoform 1 preproprotein 
KLK11                 0.138   kallikrein 11 isoform 2 precursor 
KLK11                 0.138   kallikrein 11 isoform 1 preproprotein 
KLK7                  0.127   stratum corneum chymotryptic enzyme preproprotein [H...
KLK7                  0.127   stratum corneum chymotryptic enzyme preproprotein [Ho...
GZMH                  0.125   granzyme H 
KLK4                  0.125   kallikrein-related peptidase 4 preproprotein 
KLK12                 0.125   kallikrein 12 isoform 2 
KLK15                 0.125   kallikrein-related peptidase 15 isoform 2 preproprot...
KLK5                  0.123   kallikrein-related peptidase 5 preproprotein 
KLK5                  0.123   kallikrein-related peptidase 5 preproprotein 
KLK5                  0.123   kallikrein-related peptidase 5 preproprotein 
GZMB                  0.117   granzyme B precursor 
KLK10                 0.104   kallikrein-related peptidase 10 preproprotein [Homo...
KLK10                 0.104   kallikrein-related peptidase 10 preproprotein 
KLK10                 0.104   kallikrein-related peptidase 10 preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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