Search of human proteins with 55743132

Search of human proteins with 55743132

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|55743132 ribonuclease P 40kDa subunit [Homo sapiens]
         (363 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|55743132 ribonuclease P 40kDa subunit [Homo sapiens]               759   0.0  
gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]     32   1.2  
gi|68534957 tubulin polyglutamylase complex subunit 2 [Homo sapi...    30   3.4  
gi|23510360 Ras association domain family 4 [Homo sapiens]             29   5.8  
gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]      29   5.8  
gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]      29   5.8  
gi|25777677 Ras association domain family 2 [Homo sapiens]             29   7.5  
gi|7661964 Ras association domain family 2 [Homo sapiens]              29   7.5  

>gi|55743132 ribonuclease P 40kDa subunit [Homo sapiens]
          Length = 363

 Score =  759 bits (1960), Expect = 0.0
 Identities = 363/363 (100%), Positives = 363/363 (100%)

Query: 1   MATLRRLREAPRHLLVCEKSNFGNHKSRHRHLVQTHYYNYRVSFLIPECGILSEELKNLV 60
           MATLRRLREAPRHLLVCEKSNFGNHKSRHRHLVQTHYYNYRVSFLIPECGILSEELKNLV
Sbjct: 1   MATLRRLREAPRHLLVCEKSNFGNHKSRHRHLVQTHYYNYRVSFLIPECGILSEELKNLV 60

Query: 61  MNTGPYYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALLPNGKLILSLD 120
           MNTGPYYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALLPNGKLILSLD
Sbjct: 61  MNTGPYYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALLPNGKLILSLD 120

Query: 121 KDTYEETGLQGHPSQFSGRKIMKFIVSIDLMELSLNLDSKKYERISWSFKEKKPLKFDFL 180
           KDTYEETGLQGHPSQFSGRKIMKFIVSIDLMELSLNLDSKKYERISWSFKEKKPLKFDFL
Sbjct: 121 KDTYEETGLQGHPSQFSGRKIMKFIVSIDLMELSLNLDSKKYERISWSFKEKKPLKFDFL 180

Query: 181 LAWHKTGSEESTMMSYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRALEL 240
           LAWHKTGSEESTMMSYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRALEL
Sbjct: 181 LAWHKTGSEESTMMSYFSKYQIQEHQPKVALSTLRDLQCPVLQSSELEGTPEVSCRALEL 240

Query: 241 FDWLGAVFSNVDLNNEPNNFISTYCCPEPSTVVAKAYLCTITGFILPEKICLLLEHLCHY 300
           FDWLGAVFSNVDLNNEPNNFISTYCCPEPSTVVAKAYLCTITGFILPEKICLLLEHLCHY
Sbjct: 241 FDWLGAVFSNVDLNNEPNNFISTYCCPEPSTVVAKAYLCTITGFILPEKICLLLEHLCHY 300

Query: 301 FDEPKLAPWVTLSVQGFADSPVSWEKNEHGFRKGGEHLYNFVIFNNQDYWLQMAVGANDH 360
           FDEPKLAPWVTLSVQGFADSPVSWEKNEHGFRKGGEHLYNFVIFNNQDYWLQMAVGANDH
Sbjct: 301 FDEPKLAPWVTLSVQGFADSPVSWEKNEHGFRKGGEHLYNFVIFNNQDYWLQMAVGANDH 360

Query: 361 CPP 363
           CPP
Sbjct: 361 CPP 363


>gi|12667788 myosin, heavy polypeptide 9, non-muscle [Homo sapiens]
          Length = 1960

 Score = 31.6 bits (70), Expect = 1.2
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 149  DLMELSLNLDSKKYERISWSFKEKKPLKFDFLLAWHKTGSEESTMMSYFSKYQIQEHQPK 208
            +L +L ++LD   ++R S    EKK  KFD LLA  KT S +       ++ + +E + K
Sbjct: 1421 ELDDLLVDLD---HQRQSACNLEKKQKKFDQLLAEEKTISAKYAEERDRAEAEAREKETK 1477

Query: 209  VALSTLRDLQCPVLQSSELE 228
             ALS  R L+  + Q +ELE
Sbjct: 1478 -ALSLARALEEAMEQKAELE 1496


>gi|68534957 tubulin polyglutamylase complex subunit 2 [Homo
           sapiens]
          Length = 300

 Score = 30.0 bits (66), Expect = 3.4
 Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 51  ILSEELKNLVMNTGPYYFVKNLPLHELITPEFISTFIKKGSCYALTYNTHIDEDNTVALL 110
           ++ E++KN  + T  ++   ++ L E I P      +   +  +++  T + + +  +L 
Sbjct: 60  VMPEDVKNFYLMTNGFHMTWSVKLDEHIIP------LGSMAINSISKLTQLTQSSMYSL- 112

Query: 111 PNGKLILSLDKDTYEETGLQGHPSQFSGRKIM 142
           PN   +  L+ DT+E +  Q     F  R ++
Sbjct: 113 PNAPTLADLEDDTHEASDDQPEKPHFDSRSVI 144


>gi|23510360 Ras association domain family 4 [Homo sapiens]
          Length = 321

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 28  RHRHLVQTHYYNYRVSFLIPECGILSEELKNLVMNT 63
           RHR  +  H+YN++ S   P  G ++    N  M T
Sbjct: 164 RHRFSINGHFYNHKTSVFTPAYGSVTNVRVNSTMTT 199


>gi|54607141 vacuolar protein sorting 13D isoform 2 [Homo sapiens]
          Length = 4363

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 297  LCHYFDEPKLAPWVTLSVQGFADSPVSWEKNE 328
            L + +DEP L P++TL+V+G   S ++   N+
Sbjct: 3524 LDYAWDEPTLPPFITLTVKGAGSSEINCNMND 3555


>gi|54607139 vacuolar protein sorting 13D isoform 1 [Homo sapiens]
          Length = 4388

 Score = 29.3 bits (64), Expect = 5.8
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 297  LCHYFDEPKLAPWVTLSVQGFADSPVSWEKNE 328
            L + +DEP L P++TL+V+G   S ++   N+
Sbjct: 3549 LDYAWDEPTLPPFITLTVKGAGSSEINCNMND 3580


>gi|25777677 Ras association domain family 2 [Homo sapiens]
          Length = 326

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 28  RHRHLVQTHYYNYRVSFLIPECGILSEELKNLVMNT 63
           RHR  +  H+YN++ S   P  G ++    N  M T
Sbjct: 166 RHRFSINGHFYNHKTSVFTPAYGSVTNVRINSTMTT 201


>gi|7661964 Ras association domain family 2 [Homo sapiens]
          Length = 326

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 28  RHRHLVQTHYYNYRVSFLIPECGILSEELKNLVMNT 63
           RHR  +  H+YN++ S   P  G ++    N  M T
Sbjct: 166 RHRFSINGHFYNHKTSVFTPAYGSVTNVRINSTMTT 201


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,097,140
Number of Sequences: 37866
Number of extensions: 690569
Number of successful extensions: 1288
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1280
Number of HSP's gapped (non-prelim): 10
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.