Search of human proteins with 5454024

Search of human proteins with 5454024

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5454024 ribonuclease P/MRP 30kDa subunit isoform b [Homo
sapiens]
         (268 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5454024 ribonuclease P/MRP 30kDa subunit isoform b [Homo sapi...   525   e-149
gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo sa...   518   e-147
gi|72534670 phospholipase A2-activating protein [Homo sapiens]         30   2.9  
gi|156616299 tubulin, gamma complex associated protein 5 isoform...    29   3.8  
gi|156616297 tubulin, gamma complex associated protein 5 isoform...    29   3.8  
gi|31621305 leucine-rich PPR motif-containing protein [Homo sapi...    29   3.8  
gi|163914394 DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo...    28   6.4  
gi|19913369 transducin beta-like 3 [Homo sapiens]                      28   6.4  

>gi|5454024 ribonuclease P/MRP 30kDa subunit isoform b [Homo
           sapiens]
          Length = 268

 Score =  525 bits (1353), Expect = e-149
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60
           MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT
Sbjct: 1   MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60

Query: 61  LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120
           LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL
Sbjct: 61  LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120

Query: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180
           DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC
Sbjct: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180

Query: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240
           KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG
Sbjct: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240

Query: 241 IISTVKKPRPSEGDEDCLPASKKAKCEG 268
           IISTVKKPRPSEGDEDCLPASKKAKCEG
Sbjct: 241 IISTVKKPRPSEGDEDCLPASKKAKCEG 268


>gi|157151755 ribonuclease P/MRP 30kDa subunit isoform a [Homo
           sapiens]
          Length = 322

 Score =  518 bits (1333), Expect = e-147
 Identities = 265/265 (100%), Positives = 265/265 (100%)

Query: 1   MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60
           MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT
Sbjct: 1   MAVFADLDLRAGSDLKALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTT 60

Query: 61  LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120
           LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL
Sbjct: 61  LPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHL 120

Query: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180
           DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC
Sbjct: 121 DVDLVCITVTEKLPFYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQIC 180

Query: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240
           KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG
Sbjct: 181 KGKNVIISSAAERPLEIRGPYDVANLGLLFGLSESDAKAAVSTNCRAALLHGETRKTAFG 240

Query: 241 IISTVKKPRPSEGDEDCLPASKKAK 265
           IISTVKKPRPSEGDEDCLPASKKAK
Sbjct: 241 IISTVKKPRPSEGDEDCLPASKKAK 265


>gi|72534670 phospholipase A2-activating protein [Homo sapiens]
          Length = 795

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)

Query: 27  HLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRPIKILTRLTIIVSDPSH 86
           H+  + +A+N+ V F +      K   +S + T L +VQ      ++L  L  ++SD S+
Sbjct: 699 HIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSN 758


>gi|156616299 tubulin, gamma complex associated protein 5 isoform b
           [Homo sapiens]
          Length = 1024

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 37  HIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRP----IKILTRL---TIIVSDPSHCNV 89
           + + FKE+  EIEK +  ++   TL IV  K  P    +K+L ++    +    P   NV
Sbjct: 371 YFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGVAEVPPDTRNV 430

Query: 90  LRATSSRARLYDVV 103
           +RA+     LY  +
Sbjct: 431 VRASHLLNTLYKAI 444


>gi|156616297 tubulin, gamma complex associated protein 5 isoform a
           [Homo sapiens]
          Length = 1024

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 7/74 (9%)

Query: 37  HIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRP----IKILTRL---TIIVSDPSHCNV 89
           + + FKE+  EIEK +  ++   TL IV  K  P    +K+L ++    +    P   NV
Sbjct: 371 YFISFKEELAEIEKCIINNDTTITLAIVVDKLAPRLSQLKVLHKVFSTGVAEVPPDTRNV 430

Query: 90  LRATSSRARLYDVV 103
           +RA+     LY  +
Sbjct: 431 VRASHLLNTLYKAI 444


>gi|31621305 leucine-rich PPR motif-containing protein [Homo
           sapiens]
          Length = 1394

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 39/173 (22%), Positives = 83/173 (47%), Gaps = 16/173 (9%)

Query: 16  KALRGLVETAAHLGYSVVAINHIVDFKEKKQEIEKPVAVSELFTTLPIVQGKSRPIK-IL 74
           + +R L+E+  H+   +   + +V+ K    +    +  SEL +TL  ++ +++PI+ +L
Sbjct: 624 RGIRNLLESY-HVPELIKDAHLLVESKNLDFQKTVQLTSSELESTLETLKAENQPIRDVL 682

Query: 75  TRLTIIVSDPSHCNVLRATSSRARLYDVVAVFPKTEKLFHIACTHLDVDLVCITVTEKLP 134
            +L +++   S  N+ +A   +A+ Y+   V      L ++ C H  V+   + + E+  
Sbjct: 683 KQLILVLC--SEENMQKALELKAK-YESDMVTGGYAALINLCCRHDKVE-DALNLKEE-- 736

Query: 135 FYFKRPPINVAIDRGLAFELVYSPAIKDSTMRRYTISSALNLMQICKGKNVII 187
             F R   +  +D G    LV   A      +   +  A+N+++  K K+V+I
Sbjct: 737 --FDRLDSSAVLDTGKYVGLVRVLA------KHGKLQDAINILKEMKEKDVLI 781


>gi|163914394 DEAQ box polypeptide 1 (RNA-dependent ATPase) [Homo
           sapiens]
          Length = 717

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 115 IACTHLDVDLVCITVTEKLP-FYFKRPPINVAIDRGLAFELVYSPAIK 161
           +   + D+D   + VT  L  F F  P I   ID GL    VY+P I+
Sbjct: 308 VQAVYEDMDARKVVVTHWLADFSFSLPSIQHVIDSGLELRSVYNPRIR 355


>gi|19913369 transducin beta-like 3 [Homo sapiens]
          Length = 808

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/55 (29%), Positives = 24/55 (43%)

Query: 44  KKQEIEKPVAVSELFTTLPIVQGKSRPIKILTRLTIIVSDPSHCNVLRATSSRAR 98
           ++QE++  +        L +     RP  +LT +  I  DP  C  L AT  R R
Sbjct: 653 RQQELDNLLHEKRYLRALGLAISLDRPHTVLTVIQAIRRDPEACEKLEATMLRLR 707


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,299,425
Number of Sequences: 37866
Number of extensions: 359339
Number of successful extensions: 661
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 9
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.