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Search of human proteins with 5231228
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5231228 ribonuclease T2 precursor [Homo sapiens]
(256 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5231228 ribonuclease T2 precursor [Homo sapiens] 552 e-158
gi|19923899 coiled-coil domain containing 45 [Homo sapiens] 32 0.54
gi|14149680 extended synaptotagmin-like protein 1 [Homo sapiens] 31 0.92
gi|38570099 glutamine-rich 1 [Homo sapiens] 31 1.2
gi|38570097 glutamine-rich 1 [Homo sapiens] 31 1.2
gi|239755193 PREDICTED: hypothetical protein [Homo sapiens] 30 1.6
gi|239749690 PREDICTED: hypothetical protein XP_002347120 [Homo ... 30 1.6
gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo ... 30 1.6
gi|44889963 CD163 antigen isoform b [Homo sapiens] 30 2.1
gi|44662834 CD163 antigen isoform a [Homo sapiens] 30 2.1
gi|31982909 zinc finger protein 394 [Homo sapiens] 29 3.5
gi|23238208 interleukin 17A receptor precursor [Homo sapiens] 29 4.6
gi|15619006 vasoactive intestinal peptide receptor 1 [Homo sapiens] 28 6.0
>gi|5231228 ribonuclease T2 precursor [Homo sapiens]
Length = 256
Score = 552 bits (1423), Expect = e-158
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD 60
MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD
Sbjct: 1 MRPAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD 60
Query: 61 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT 120
YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT
Sbjct: 61 YWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGT 120
Query: 121 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP 180
CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP
Sbjct: 121 CAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIP 180
Query: 181 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV 240
KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV
Sbjct: 181 KIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLRV 240
Query: 241 CEDGPVFYPPPKKTKH 256
CEDGPVFYPPPKKTKH
Sbjct: 241 CEDGPVFYPPPKKTKH 256
>gi|19923899 coiled-coil domain containing 45 [Homo sapiens]
Length = 821
Score = 32.0 bits (71), Expect = 0.54
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 19/107 (17%)
Query: 76 NRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDAL------- 128
N++ P + E LLP M +P + S P S+ WK + AQV+ L
Sbjct: 553 NKAVPMKVSE-HSLLPLMLEQFPFLYVSGPTLSKMWKQQ-------IAQVEQLKKEACRE 604
Query: 129 -NSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALAR 174
S+KK E R DL + L+K K + ++ DFKD + R
Sbjct: 605 NRSKKKLQDEIEEALRRHDLLTTLVK---KEYEHNKRLQDFKDCIRR 648
>gi|14149680 extended synaptotagmin-like protein 1 [Homo sapiens]
Length = 1104
Score = 31.2 bits (69), Expect = 0.92
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 33 EWKKLIMVQHWPETVCEKIQNDCRDPPDYWTIHGLWPDKSEGCNR 77
E +KL+ + H C ++ + RDPPD + L PDK+ G R
Sbjct: 984 EERKLVSIVHG----CRSLRQNGRDPPDPYVSLLLLPDKNRGTKR 1024
>gi|38570099 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 180 PKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLR 239
P+ Q PP Q ++ Q+++ + Q Q+ EP QP P E+ L N GL
Sbjct: 427 PQEQTPPPQQQQQ-----QLQVTCSAQTVQVAE-VEPQSQPQPSPELLLPNSLKPEEGLE 480
Query: 240 V 240
V
Sbjct: 481 V 481
>gi|38570097 glutamine-rich 1 [Homo sapiens]
Length = 776
Score = 30.8 bits (68), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 180 PKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEPGEQPSPKQEVWLANGAAESRGLR 239
P+ Q PP Q ++ Q+++ + Q Q+ EP QP P E+ L N GL
Sbjct: 427 PQEQTPPPQQQQQ-----QLQVTCSAQTVQVAE-VEPQSQPQPSPELLLPNSLKPEEGLE 480
Query: 240 V 240
V
Sbjct: 481 V 481
>gi|239755193 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 30.4 bits (67), Expect = 1.6
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 139 LELYRELDLNSVL---LKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQT 195
LEL L+L VL L G++P++ + V + LAR ++ ++ + Q+E+ T
Sbjct: 52 LELLLALNLELVLELALAPGLEPALGW--VLELVLELARALELVLELALVTELQEEKSST 109
Query: 196 IGQIELCLTKQDQQLQNCTEPGEQPSPK---QEVWLANGAAESRGLRVCEDG 244
Q LCL+K +Q E P+P+ Q L A LR+C +G
Sbjct: 110 TCQPFLCLSKDTEQ-PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNG 160
>gi|239749690 PREDICTED: hypothetical protein XP_002347120 [Homo
sapiens]
Length = 268
Score = 30.4 bits (67), Expect = 1.6
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 139 LELYRELDLNSVL---LKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQT 195
LEL L+L VL L G++P++ + V + LAR ++ ++ + Q+E+ T
Sbjct: 52 LELLLALNLELVLELALAPGLEPALGW--VLELVLELARALELVLELALVTELQEEKSST 109
Query: 196 IGQIELCLTKQDQQLQNCTEPGEQPSPK---QEVWLANGAAESRGLRVCEDG 244
Q LCL+K +Q E P+P+ Q L A LR+C +G
Sbjct: 110 TCQPFLCLSKDTEQ-PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNG 160
>gi|239743958 PREDICTED: hypothetical protein XP_002344281 [Homo
sapiens]
Length = 268
Score = 30.4 bits (67), Expect = 1.6
Identities = 33/112 (29%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 139 LELYRELDLNSVL---LKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQT 195
LEL L+L VL L G++P++ + V + LAR ++ ++ + Q+E+ T
Sbjct: 52 LELLLALNLELVLELALAPGLEPALGW--VLELVLELARALELVLELALVTELQEEKSST 109
Query: 196 IGQIELCLTKQDQQLQNCTEPGEQPSPK---QEVWLANGAAESRGLRVCEDG 244
Q LCL+K +Q E P+P+ Q L A LR+C +G
Sbjct: 110 TCQPFLCLSKDTEQ-PRLPEKPLSPNPQNVYQATLLPVVPAFLLTLRLCLNG 160
>gi|44889963 CD163 antigen isoform b [Homo sapiens]
Length = 1121
Score = 30.0 bits (66), Expect = 2.1
Identities = 38/143 (26%), Positives = 47/143 (32%), Gaps = 35/143 (24%)
Query: 1 MRPAALRGALLGCLCLALLCLGGADKRLR-----DNHEWKKLIMVQHWPETVC------E 49
+ P + LL C LGG DK LR + + + VQ TVC E
Sbjct: 24 LSPFTITVVLLLSACFVTSSLGGTDKELRLVDGENKCSGRVEVKVQEEWGTVCNNGWSME 83
Query: 50 KIQNDCRD--PPDYWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNR 107
+ C P G W + S G R W D + N
Sbjct: 84 AVSVICNQLGCPTAIKAPG-WANSSAGSGR------------------IWMDHVSCRGNE 124
Query: 108 SRFW--KHE-WEKHGTCAAQVDA 127
S W KH+ W KH C Q DA
Sbjct: 125 SALWDCKHDGWGKHSNCTHQQDA 147
>gi|44662834 CD163 antigen isoform a [Homo sapiens]
Length = 1156
Score = 30.0 bits (66), Expect = 2.1
Identities = 38/143 (26%), Positives = 47/143 (32%), Gaps = 35/143 (24%)
Query: 1 MRPAALRGALLGCLCLALLCLGGADKRLR-----DNHEWKKLIMVQHWPETVC------E 49
+ P + LL C LGG DK LR + + + VQ TVC E
Sbjct: 24 LSPFTITVVLLLSACFVTSSLGGTDKELRLVDGENKCSGRVEVKVQEEWGTVCNNGWSME 83
Query: 50 KIQNDCRD--PPDYWTIHGLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNR 107
+ C P G W + S G R W D + N
Sbjct: 84 AVSVICNQLGCPTAIKAPG-WANSSAGSGR------------------IWMDHVSCRGNE 124
Query: 108 SRFW--KHE-WEKHGTCAAQVDA 127
S W KH+ W KH C Q DA
Sbjct: 125 SALWDCKHDGWGKHSNCTHQQDA 147
>gi|31982909 zinc finger protein 394 [Homo sapiens]
Length = 561
Score = 29.3 bits (64), Expect = 3.5
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 25 DKRLRDNHEWKKLIMVQHWPE----TVCEKIQNDCRDPPDYWTIHGLWPDKSEGCNRSWP 80
+ L+++ L++ QH P+ T E+ N C+ T H L P KS+ +
Sbjct: 283 NNELQNSARCSNLVLCQHIPKAERPTDSEEHGNKCKQSFHMVTWHVLKPHKSDSGDSFHH 342
Query: 81 FNLEEIKDLLPEMRAY-WPDVIHSFPNRSRFWKHE 114
+L E + L E R Y + SF RS ++H+
Sbjct: 343 SSLFETQRQLHEERPYKCGNCGKSFKQRSDLFRHQ 377
>gi|23238208 interleukin 17A receptor precursor [Homo sapiens]
Length = 866
Score = 28.9 bits (63), Expect = 4.6
Identities = 32/99 (32%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 3 PAALRGALLGCLCLAL--LCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPD 60
P+A+ G LLG L L L L GGA RL D+ +V P C + C D D
Sbjct: 8 PSAVPGPLLGLLLLLLGVLAPGGASLRLLDHR-----ALVCSQPGLNCTVKNSTCLD--D 60
Query: 61 YWTIH--GLWPDKSEGCNRSWPFNLEEIKDLLPEMRAYW 97
W IH L P + F + DL P W
Sbjct: 61 SW-IHPRNLTPSSPKDLQIQLHFAHTQQGDLFPVAHIEW 98
>gi|15619006 vasoactive intestinal peptide receptor 1 [Homo
sapiens]
Length = 457
Score = 28.5 bits (62), Expect = 6.0
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 3 PAALRGALLGCLCLALLCLGGADKRLRDNHEWKKLIMVQHWPETVCEKIQNDCRDPPDYW 62
PA L G L AL GG RL++ ++ ++I VQH +++N+ W
Sbjct: 8 PARWLCVLAGALAWALGPAGGQAARLQEECDYVQMIEVQHKQCLEEAQLENETIGCSKMW 67
Query: 63 TIHGLWPDKSEG 74
WP G
Sbjct: 68 DNLTCWPATPRG 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.138 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,087,977
Number of Sequences: 37866
Number of extensions: 579998
Number of successful extensions: 1181
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 15
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.