Search of human proteins with 134053959

Search of human proteins with 134053959

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|134053959 hypothetical protein LOC79736 [Homo sapiens]
         (360 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134053959 hypothetical protein LOC79736 [Homo sapiens]             718   0.0  
gi|71043966 endonuclease/exonuclease/phosphatase family domain c...    33   0.52 
gi|6453818 kinesin family member 22 [Homo sapiens]                     30   2.6  
gi|221136781 S1 RNA binding domain 1 [Homo sapiens]                    30   4.4  
gi|115527120 nebulin [Homo sapiens]                                    29   7.5  
gi|190341074 pyridoxal-dependent decarboxylase domain containing...    29   7.5  
gi|4503515 eukaryotic translation initiation factor 3, subunit 3...    28   9.8  
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu...    28   9.8  
gi|118498337 HECT domain containing 1 [Homo sapiens]                   28   9.8  
gi|27597061 ubiquitin protein ligase E3 component n-recognin 2 [...    28   9.8  

>gi|134053959 hypothetical protein LOC79736 [Homo sapiens]
          Length = 360

 Score =  718 bits (1854), Expect = 0.0
 Identities = 360/360 (100%), Positives = 360/360 (100%)

Query: 1   MSGSVLFTAGERWRCFLTPSRSSLYWALHNFCCRKKSTTPKKITPNVTFCDENAKEPENA 60
           MSGSVLFTAGERWRCFLTPSRSSLYWALHNFCCRKKSTTPKKITPNVTFCDENAKEPENA
Sbjct: 1   MSGSVLFTAGERWRCFLTPSRSSLYWALHNFCCRKKSTTPKKITPNVTFCDENAKEPENA 60

Query: 61  LDKLFSSEQQASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNVPL 120
           LDKLFSSEQQASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNVPL
Sbjct: 61  LDKLFSSEQQASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNVPL 120

Query: 121 FKYKSTVQVCNSILCPKTGREKRKSPENRFLRKLLKPDIERERLKAVNSIISIVFGTRRI 180
           FKYKSTVQVCNSILCPKTGREKRKSPENRFLRKLLKPDIERERLKAVNSIISIVFGTRRI
Sbjct: 121 FKYKSTVQVCNSILCPKTGREKRKSPENRFLRKLLKPDIERERLKAVNSIISIVFGTRRI 180

Query: 181 AWAHLDRKLTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADFYVLEKTGLSIQN 240
           AWAHLDRKLTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADFYVLEKTGLSIQN
Sbjct: 181 AWAHLDRKLTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADFYVLEKTGLSIQN 240

Query: 241 SSLFPILLHFHIMEAMLYALLNKTFAQDGQHQVLSMNRNAVGKHFELMIGDSRTSGKELV 300
           SSLFPILLHFHIMEAMLYALLNKTFAQDGQHQVLSMNRNAVGKHFELMIGDSRTSGKELV
Sbjct: 241 SSLFPILLHFHIMEAMLYALLNKTFAQDGQHQVLSMNRNAVGKHFELMIGDSRTSGKELV 300

Query: 301 KQFLFDSILKADPRVFFPSDKIVHYRQMFLSTELQRVEELYDSLLQAIAFYELAVFDSQP 360
           KQFLFDSILKADPRVFFPSDKIVHYRQMFLSTELQRVEELYDSLLQAIAFYELAVFDSQP
Sbjct: 301 KQFLFDSILKADPRVFFPSDKIVHYRQMFLSTELQRVEELYDSLLQAIAFYELAVFDSQP 360


>gi|71043966 endonuclease/exonuclease/phosphatase family domain
           containing 1 [Homo sapiens]
          Length = 569

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 14/42 (33%), Positives = 28/42 (66%)

Query: 77  LNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNV 118
           +NTA+  +L + R L  + +++IV+ R   GPF+++E L+ +
Sbjct: 139 INTATPAQLMSVRGLSEKMALSIVDFRREHGPFRSVEDLVRM 180


>gi|6453818 kinesin family member 22 [Homo sapiens]
          Length = 665

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 73  ILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNV 118
           IL +LN  S ++L + + +  +++  IV  RE  GPF  +E L  V
Sbjct: 592 ILDLLNEGSARDLRSLQRIGPKKAQLIVGWRELHGPFSQVEDLERV 637


>gi|221136781 S1 RNA binding domain 1 [Homo sapiens]
          Length = 995

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 21/57 (36%), Positives = 24/57 (42%)

Query: 77  LNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNVPLFKYKSTVQVCNSI 133
           +N  S   L     L   R+ NI+E RE  GPF N E L  V     KS  Q    I
Sbjct: 710 INICSEVLLRHIAGLNANRAKNIIEWREKNGPFINREQLKKVKGLGPKSFQQCAGFI 766


>gi|115527120 nebulin [Homo sapiens]
          Length = 6669

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 186  DRKLTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADFYVLEKTGLSIQNS 241
            D+  TVL+    DR   ++ +YSS++Y E    +     KA  Y+L  + LS+ ++
Sbjct: 4678 DKYTTVLETVDYDRTRNLKNLYSSNLYKEAWDRV-----KATSYILPSSTLSLTHA 4728


>gi|190341074 pyridoxal-dependent decarboxylase domain containing 1
           [Homo sapiens]
          Length = 788

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 150 FLRKLLKPDIERERLKAVNSIISIVFGTRRIAWAHLDR--KLTVLDWQQSDRWSLMRGIY 207
           FL KL+K DIER RL      + +V      A  H D+  +L  L  +Q   W  + G+ 
Sbjct: 220 FLEKLIKDDIERGRLP-----LLLVANAGTAAVGHTDKIGRLKEL-CEQYGIWLHVEGVN 273

Query: 208 SSSVYLEEISSIISKMPKAD 227
            +++ L  +SS +    K D
Sbjct: 274 LATLALGYVSSSVLAAAKCD 293


>gi|4503515 eukaryotic translation initiation factor 3, subunit 3
           gamma, 40kDa [Homo sapiens]
          Length = 352

 Score = 28.5 bits (62), Expect = 9.8
 Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 11/74 (14%)

Query: 229 YVLEKTGLSIQNSSLFPILLHFHIMEAMLYALLNKTFAQDGQHQVLSM-NRNAVGKHFEL 287
           Y+ E+  + I+NS         H++  +++ L  K+   D +H++LS+ + N +GK+ +L
Sbjct: 196 YMFEEVPIVIKNS---------HLINVLMWELEKKSAVAD-KHELLSLASSNHLGKNLQL 245

Query: 288 MIGDSRTSGKELVK 301
           ++       +++VK
Sbjct: 246 LMDRVDEMSQDIVK 259


>gi|26051243 tumor necrosis factor, alpha-induced protein 6
           precursor [Homo sapiens]
          Length = 277

 Score = 28.5 bits (62), Expect = 9.8
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 189 LTVLDWQQSDRWSLMRGIYSSSVYLEEISSIISKMPKADFYVL 231
           L +L W+ +  W    GI+ +S++LE  + +  +  ++  Y L
Sbjct: 7   LFLLLWEDTQGWGFKDGIFHNSIWLERAAGVYHREARSGKYKL 49


>gi|118498337 HECT domain containing 1 [Homo sapiens]
          Length = 2610

 Score = 28.5 bits (62), Expect = 9.8
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 5/81 (6%)

Query: 66   SSEQQASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFG-----PFQNLESLMNVPL 120
            SS ++ S   V + AS+ ++        RRS  ++EH    G     P   L S  NVP 
Sbjct: 1378 SSSRKGSSSSVCSVASSSDISLGSTKTERRSEIVMEHSIVSGADVHEPIVVLSSAENVPQ 1437

Query: 121  FKYKSTVQVCNSILCPKTGRE 141
             +  S+     S L  +TG E
Sbjct: 1438 TEVGSSSSASTSTLTAETGSE 1458


>gi|27597061 ubiquitin protein ligase E3 component n-recognin 2 [Homo
            sapiens]
          Length = 1755

 Score = 28.5 bits (62), Expect = 9.8
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 68   EQQASILHVLNTASTKELEAFRLLRGRRSINIVEHRENFGPFQNLESLMNVPLFKYKSTV 127
            ++ + I++ L  +  +  E  R L G R         N         L+N+P   Y S +
Sbjct: 1561 QENSEIMNSLIESWCRNSEVKRYLEGERDAIRYPRESN--------KLINLPE-DYSSLI 1611

Query: 128  QVCNSILCPKTGREKRKSP 146
               ++  CPK+G +K ++P
Sbjct: 1612 NQASNFSCPKSGGDKSRAP 1630


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,249,616
Number of Sequences: 37866
Number of extensions: 489913
Number of successful extensions: 1239
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1233
Number of HSP's gapped (non-prelim): 11
length of query: 360
length of database: 18,247,518
effective HSP length: 103
effective length of query: 257
effective length of database: 14,347,320
effective search space: 3687261240
effective search space used: 3687261240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.