Guide to the Human Genome
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Name: C17orf42 Sequence: fasta or formatted (360aa) NCBI GI: 134053959
Description:

hypothetical protein LOC79736

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         19           1
 C cysteine            1.7          6           2
 D aspartate           3.9         14           1
 E glutamate           6.7         24           2
 F phenylalanine       6.4         23           2
 G glycine             3.3         12           1
 H histidine           2.5          9           1
 I isoleucine          5.8         21           2
 K lysine              6.9         25           2
 L leucine            11.9         43           2
 M methionine          2.5          9           1
 N asparagine          4.4         16           1
 P proline             3.9         14           1
 Q glutamine           4.2         15           2
 R arginine            6.9         25           2
 S serine             10.0         36           3
 T threonine           4.4         16           2
 V valine              5.3         19           1
 W tryptophan          1.4          5           1
 Y tyrosine            2.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC79736 
EEPD1                 0.012   endonuclease/exonuclease/phosphatase family domain c...
KIF22                 0.007   kinesin family member 22 
SRBD1                 0.007   S1 RNA binding domain 1 
NEB                   0.006   nebulin 
PDXDC1                0.006   pyridoxal-dependent decarboxylase domain containing...
EIF3H                 0.004   eukaryotic translation initiation factor 3, subunit 3...
TNFAIP6               0.004   tumor necrosis factor, alpha-induced protein 6 precu...
HECTD1                0.004   HECT domain containing 1 
UBR2                  0.004   ubiquitin protein ligase E3 component n-recognin 2 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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