Search of human proteins with 5174615

Search of human proteins with 5174615

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]
         (210 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]                     449   e-127
gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]                   262   1e-70
gi|31542298 hypothetical protein LOC51016 [Homo sapiens]              169   2e-42
gi|32171247 cyclin Y isoform 1 [Homo sapiens]                          30   1.5  
gi|190341110 cyclin Y isoform 2 [Homo sapiens]                         30   1.5  
gi|13027612 RAS-like family 11 member B [Homo sapiens]                 28   4.3  
gi|226371655 zinc finger family member 674 isoform 2 [Homo sapiens]    28   7.4  
gi|89994742 zinc finger family member 674 isoform 1 [Homo sapiens]     28   7.4  
gi|222446609 rai-like protein [Homo sapiens]                           27   9.6  
gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]    27   9.6  
gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]     27   9.6  

>gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]
          Length = 210

 Score =  449 bits (1155), Expect = e-127
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60
           MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120
           FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120

Query: 121 DTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSY 180
           DTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSY
Sbjct: 121 DTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSY 180

Query: 181 ETLVDFDNHLDDIRNDWTNPEINKAVLHLC 210
           ETLVDFDNHLDDIRNDWTNPEINKAVLHLC
Sbjct: 181 ETLVDFDNHLDDIRNDWTNPEINKAVLHLC 210


>gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]
          Length = 126

 Score =  262 bits (670), Expect = 1e-70
 Identities = 126/126 (100%), Positives = 126/126 (100%)

Query: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60
           MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120
           FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120

Query: 121 DTALIM 126
           DTALIM
Sbjct: 121 DTALIM 126


>gi|31542298 hypothetical protein LOC51016 [Homo sapiens]
          Length = 208

 Score =  169 bits (427), Expect = 2e-42
 Identities = 89/206 (43%), Positives = 117/206 (56%), Gaps = 11/206 (5%)

Query: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60
           M  V+++  AY KM LH A+YPH AVNGL +A   +                   DC+PL
Sbjct: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPR-----------SGECLCLTDCVPL 49

Query: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120
           FH  LAL+ MLEVAL  +D W      V+AGYY AN  V D SP  +A K+A RIAE F 
Sbjct: 50  FHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFP 109

Query: 121 DTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSY 180
           D  LIM+DN K       P + V E+   RW  +D +     DW E++++  +LL+ R++
Sbjct: 110 DAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAH 169

Query: 181 ETLVDFDNHLDDIRNDWTNPEINKAV 206
           + LVDFD HLDDIR DWTN  +N  +
Sbjct: 170 QHLVDFDCHLDDIRQDWTNQRLNTQI 195


>gi|32171247 cyclin Y isoform 1 [Homo sapiens]
          Length = 341

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 104 PNQVAEKVASRIAEGFSDTALIMVDNTKFTMDCVAPTIHVYEHHENR 150
           P Q+A K +S  +  F D + +   N K+T+ CVA  + +Y H +NR
Sbjct: 91  PGQIARKYSS-CSTIFLDDSTVSQPNLKYTIKCVA--LAIYYHIKNR 134


>gi|190341110 cyclin Y isoform 2 [Homo sapiens]
          Length = 287

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 104 PNQVAEKVASRIAEGFSDTALIMVDNTKFTMDCVAPTIHVYEHHENR 150
           P Q+A K +S  +  F D + +   N K+T+ CVA  + +Y H +NR
Sbjct: 37  PGQIARKYSS-CSTIFLDDSTVSQPNLKYTIKCVA--LAIYYHIKNR 80


>gi|13027612 RAS-like family 11 member B [Homo sapiens]
          Length = 248

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 147 HENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYETLVDFDNHLDDIRNDWTNPEI---N 203
           HEN   C +   + C  W +A  I  S+ D +SYE +     H+  +      P +   N
Sbjct: 94  HENSLSCSE-QLNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVAN 152

Query: 204 KA-VLHL 209
           KA +LH+
Sbjct: 153 KADLLHI 159


>gi|226371655 zinc finger family member 674 isoform 2 [Homo sapiens]
          Length = 575

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 3   GVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRK 39
           G+K TT +     +H ++ P C+ +G    EK  P K
Sbjct: 332 GIKCTTSSLIYQRIHTSEKPQCSEHGKASDEKPSPTK 368


>gi|89994742 zinc finger family member 674 isoform 1 [Homo sapiens]
          Length = 581

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 3   GVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRK 39
           G+K TT +     +H ++ P C+ +G    EK  P K
Sbjct: 338 GIKCTTSSLIYQRIHTSEKPQCSEHGKASDEKPSPTK 374


>gi|222446609 rai-like protein [Homo sapiens]
          Length = 630

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 5/74 (6%)

Query: 105 NQVAEKVASRIAEGFSDTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDW 164
           N +A+ V S I + F       + N      C +  +H+  H E R       H+Y  + 
Sbjct: 324 NGMAQDVISTIGQAFELRFKQYLKNPSLNTSCESEEVHIDSHAEER-----EDHEYYNEI 378

Query: 165 PEAQRISASLLDSR 178
           P  Q     + D R
Sbjct: 379 PGKQPPVGGVSDMR 392


>gi|218083800 Rho GTPase-activating protein isoform 1 [Homo sapiens]
          Length = 2087

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 145  EHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYETLVDF 186
            +HH+       PH  Y    PE  RI++  LDS   +  V F
Sbjct: 1141 QHHQVDLTGNQPHQAYLSGDPEKARITSVPLDSEKSDDHVSF 1182


>gi|29469071 Rho GTPase-activating protein isoform 2 [Homo sapiens]
          Length = 1738

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 145 EHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSYETLVDF 186
           +HH+       PH  Y    PE  RI++  LDS   +  V F
Sbjct: 792 QHHQVDLTGNQPHQAYLSGDPEKARITSVPLDSEKSDDHVSF 833


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.136    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,492,060
Number of Sequences: 37866
Number of extensions: 353814
Number of successful extensions: 785
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 11
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.