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Search of human proteins with 5174415
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5174415 choline/ethanolaminephosphotransferase [Homo
sapiens]
(416 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5174415 choline/ethanolaminephosphotransferase [Homo sapiens] 862 0.0
gi|56118223 choline/ethanolaminephosphotransferase [Homo sapiens] 862 0.0
gi|50726996 choline phosphotransferase 1 [Homo sapiens] 526 e-149
gi|50083289 selenoprotein I [Homo sapiens] 131 1e-30
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13... 32 1.4
gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens] 31 1.8
gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens] 31 1.8
gi|239750075 PREDICTED: hypothetical protein [Homo sapiens] 30 3.1
gi|239744384 PREDICTED: hypothetical protein XP_002343133 [Homo ... 30 3.1
gi|5453906 CDP-diacylglycerol-inositol 3-phosphatidyltransferase... 30 3.1
gi|8922854 kelch-like 26 [Homo sapiens] 30 3.1
gi|239750932 PREDICTED: hypothetical protein [Homo sapiens] 29 6.9
gi|149158709 histamine receptor H1 [Homo sapiens] 29 6.9
gi|149158706 histamine receptor H1 [Homo sapiens] 29 6.9
gi|149158704 histamine receptor H1 [Homo sapiens] 29 6.9
gi|4504491 histamine receptor H1 [Homo sapiens] 29 6.9
gi|155369269 tetraspanin 19 [Homo sapiens] 29 9.0
gi|46048143 olfactory receptor, family 1, subfamily N, member 1 ... 29 9.0
>gi|5174415 choline/ethanolaminephosphotransferase [Homo sapiens]
Length = 416
Score = 862 bits (2228), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAG 60
MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAG
Sbjct: 1 MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAG 60
Query: 61 RSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYI 120
RSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYI
Sbjct: 61 RSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYI 120
Query: 121 ACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPD 180
ACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPD
Sbjct: 121 ACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPD 180
Query: 181 WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP 240
WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP
Sbjct: 181 WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP 240
Query: 241 VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLA 300
VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLA
Sbjct: 241 VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLA 300
Query: 301 AMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLD 360
AMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLD
Sbjct: 301 AMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLD 360
Query: 361 QYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH 416
QYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH
Sbjct: 361 QYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH 416
>gi|56118223 choline/ethanolaminephosphotransferase [Homo sapiens]
Length = 416
Score = 862 bits (2228), Expect = 0.0
Identities = 416/416 (100%), Positives = 416/416 (100%)
Query: 1 MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAG 60
MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAG
Sbjct: 1 MSGHRSTRKRCGDSHPESPVGFGHMSTTGCVLNKLFQLPTPPLSRHQLKRLEEHRYQSAG 60
Query: 61 RSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYI 120
RSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYI
Sbjct: 61 RSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTILLVFYCPTATEQAPLWAYI 120
Query: 121 ACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPD 180
ACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPD
Sbjct: 121 ACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPD 180
Query: 181 WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP 240
WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP
Sbjct: 181 WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP 240
Query: 241 VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLA 300
VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLA
Sbjct: 241 VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLA 300
Query: 301 AMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLD 360
AMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLD
Sbjct: 301 AMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTKSEMHLHDTAFIGPALLFLD 360
Query: 361 QYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH 416
QYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH
Sbjct: 361 QYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRIKVSTAHSNHH 416
>gi|50726996 choline phosphotransferase 1 [Homo sapiens]
Length = 406
Score = 526 bits (1356), Expect = e-149
Identities = 243/364 (66%), Positives = 296/364 (81%)
Query: 42 PLSRHQLKRLEEHRYQSAGRSLLEPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTI 101
PLS QL+RLEEHRY +AG SLLEP +Q YW WL++ +P W+APN IT++GL++N+ TT+
Sbjct: 20 PLSAAQLRRLEEHRYSAAGVSLLEPPLQLYWTWLLQWIPLWMAPNSITLLGLAVNVVTTL 79
Query: 102 LLVFYCPTATEQAPLWAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDHGCDSLS 161
+L+ YCPTATE+AP W Y+ CA GLFIYQSLDAIDGKQARRTNS SPLGELFDHGCDSLS
Sbjct: 80 VLISYCPTATEEAPYWTYLLCALGLFIYQSLDAIDGKQARRTNSCSPLGELFDHGCDSLS 139
Query: 162 TVFVVLGTCIAVQLGTNPDWMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFII 221
TVF+ +G IA +LGT PDW FFC F G F+FYCAHWQTYVSG LRFG +DVTE+QI ++
Sbjct: 140 TVFMAVGASIAARLGTYPDWFFFCSFIGMFVFYCAHWQTYVSGMLRFGKVDVTEIQIALV 199
Query: 222 IMHLLAVIGGPPFWQSMIPVLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGSTI 281
I+ +L+ GG W IP+L I++KI P L + G IFSC+NYF VI GGVGKNGSTI
Sbjct: 200 IVFVLSAFGGATMWDYTIPILEIKLKILPVLGFLGGVIFSCSNYFHVILHGGVGKNGSTI 259
Query: 282 AGTSVLSPFLHIGSVITLAAMIYKKSAVQLFEKHPCLYILTFGFVSAKITNKLVVAHMTK 341
AGTSVLSP LHIG +I LA MIYKKSA +FEKHPCLYIL FG V AK++ KLVVAHMTK
Sbjct: 260 AGTSVLSPGLHIGLIIILAIMIYKKSATDVFEKHPCLYILMFGCVFAKVSQKLVVAHMTK 319
Query: 342 SEMHLHDTAFIGPALLFLDQYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHI 401
SE++L DT F+GP LLFLDQYFN+FIDEY+VLW+A+V S FD++ Y ++C QI+ HLH+
Sbjct: 320 SELYLQDTVFLGPGLLFLDQYFNNFIDEYVVLWMAMVISSFDMVIYFSALCLQISRHLHL 379
Query: 402 HVFR 405
++F+
Sbjct: 380 NIFK 383
>gi|50083289 selenoprotein I [Homo sapiens]
Length = 397
Score = 131 bits (329), Expect = 1e-30
Identities = 103/384 (26%), Positives = 184/384 (47%), Gaps = 28/384 (7%)
Query: 43 LSRHQLKRLEEHRYQSAGRSLLEP-LMQGYWEWLVRRVPSWIAPNLITIIGLSINICTTI 101
+S QL ++++Y + + L +M +W +V+ P+W+APNLIT G + + +
Sbjct: 7 VSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTIVKVFPTWLAPNLITFSGFLLVVFNFL 66
Query: 102 LLVFYCPTATEQAPL------WAYIACACGLFIYQSLDAIDGKQARRTNSSSPLGELFDH 155
L+ ++ P AP W +I F+ +LD +DGKQARRTNSS+PLGELFDH
Sbjct: 67 LMAYFDPDFYASAPGHKHVPDWVWIVVGILNFVAYTLDGVDGKQARRTNSSTPLGELFDH 126
Query: 156 GCDSLSTVFVVLGTCIAV----QLGTNPDWMFFCCFAGTFMFYCAHWQTYVSGT--LRFG 209
G DS S V+ V+ T ++ G + ++ + F F +HW+ Y +G L +G
Sbjct: 127 GLDSWSCVYFVV-TVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYNTGILFLPWG 185
Query: 210 IIDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKIFPAL---CTVAGTI-FSCTNY 265
D+++V I + +++ + G W + +F A+ C + T+ S N+
Sbjct: 186 -YDISQVTISFV--YIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLLNF 242
Query: 266 FRVIFTGGVGKNGSTIAGTSVLSPFLHIGSVITLAAMIYKKSAVQLFEKHPCLYILTFGF 325
FR + N A + SP L +++ A +++ S + E HP ++ G
Sbjct: 243 FRSYKNNTLKLNSVYEAMVPLFSPCLLF--ILSTAWILWSPS--DILELHPRVFYFMVGT 298
Query: 326 VSAKITNKLVVAHMTKSEMHLHDTAFIGPAL--LFLDQYFNSFIDEYIVLWIALVFSFFD 383
A T +L+V M+ + + + L L ++ S+++ ++ + F+
Sbjct: 299 AFANSTCQLIVCQMSSTRCPTLNWLLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAH 358
Query: 384 LIRYCVSVCNQIASHLHIHVFRIK 407
I Y V V Q++SH I+ F ++
Sbjct: 359 -IHYGVRVVKQLSSHFQIYPFSLR 381
>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
[Homo sapiens]
Length = 5058
Score = 31.6 bits (70), Expect = 1.4
Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 11/91 (12%)
Query: 200 TYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIPVLNIQMKIFPALCTVAGTI 259
+YVS FG+ + + I+ LLA+I Q++ VL IFP C G +
Sbjct: 4570 SYVSLNFIFGLCTM----LITIMPRLLAIISKAKNLQNIYDVLKWVFTIFPQFCLGQGLV 4625
Query: 260 FSCTNYFRVIFTGGVGKNGSTIAGTSVLSPF 290
C N + T G + S +SPF
Sbjct: 4626 ELCYNQIKYDLTHNFGID-------SYVSPF 4649
>gi|10181096 adenylate cyclase 6 isoform a [Homo sapiens]
Length = 1168
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 88 ITIIGLSINICTTILLVFYCPTATEQAPLWAYIACACGLFIYQSLDAIDGKQARRTNSSS 147
+T++ + + T +LL F+ A Q A +ACA LF+ L + + + R +S
Sbjct: 152 LTLLMAVLVLLTAVLLAFHAAPARPQPAYVALLACAAALFV--GLMVVCNRHSFRQDSMW 209
Query: 148 PLGELFDHGCDSLSTVFVVLGTCIAVQLG 176
+ +VVLG AVQ+G
Sbjct: 210 VVS-------------YVVLGILAAVQVG 225
>gi|10947061 adenylate cyclase 6 isoform b [Homo sapiens]
Length = 1115
Score = 31.2 bits (69), Expect = 1.8
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 15/89 (16%)
Query: 88 ITIIGLSINICTTILLVFYCPTATEQAPLWAYIACACGLFIYQSLDAIDGKQARRTNSSS 147
+T++ + + T +LL F+ A Q A +ACA LF+ L + + + R +S
Sbjct: 152 LTLLMAVLVLLTAVLLAFHAAPARPQPAYVALLACAAALFV--GLMVVCNRHSFRQDSMW 209
Query: 148 PLGELFDHGCDSLSTVFVVLGTCIAVQLG 176
+ +VVLG AVQ+G
Sbjct: 210 VVS-------------YVVLGILAAVQVG 225
>gi|239750075 PREDICTED: hypothetical protein [Homo sapiens]
Length = 263
Score = 30.4 bits (67), Expect = 3.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 177 TNPDWMFFCCFAGTFMFYCAH-WQTYVSGTLRFG-IIDVTEVQIFIIIMHL 225
T W C + F C+ WQ + S TLR II + +++ + I+H+
Sbjct: 33 TKSSWPGVPCMHSSMYFSCSSLWQLFASSTLRISRIISLGSMELVVFILHV 83
>gi|239744384 PREDICTED: hypothetical protein XP_002343133 [Homo
sapiens]
Length = 263
Score = 30.4 bits (67), Expect = 3.1
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 177 TNPDWMFFCCFAGTFMFYCAH-WQTYVSGTLRFG-IIDVTEVQIFIIIMHL 225
T W C + F C+ WQ + S TLR II + +++ + I+H+
Sbjct: 33 TKSSWPGVPCMHSSMYFSCSSLWQLFASSTLRISRIISLGSMELVVFILHV 83
>gi|5453906 CDP-diacylglycerol-inositol 3-phosphatidyltransferase
[Homo sapiens]
Length = 213
Score = 30.4 bits (67), Expect = 3.1
Identities = 47/178 (26%), Positives = 62/178 (34%), Gaps = 34/178 (19%)
Query: 132 LDAIDGKQARRTNSSSPLGELFDHGCDSLSTVFVVLGTCIAVQLGTNPDWMFFCCFAGTF 191
LDA DG AR N + G + D D ST+ C+ V L
Sbjct: 46 LDAFDGHAARALNQGTRFGAMLDMLTDRCSTM------CLLVNLAL-------------- 85
Query: 192 MFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQ---SMIPVLNIQMKI 248
Y TL F I +V + +H V G S PVL I
Sbjct: 86 --------LYPGATLFFQISMSLDVASHWLHLHSSVVRGSESHKMIDLSGNPVLRIYYTS 137
Query: 249 FPALCTV--AGTIFSCTNYFRVIFTGG-VGKNGSTIAGTSVLSPFLHIGSVITLAAMI 303
PAL T+ +F C Y G VG G G V +P + S+I++ +I
Sbjct: 138 RPALFTLCAGNELFYCLLYLFHFSEGPLVGSVGLFRMGLWVTAPIALLKSLISVIHLI 195
>gi|8922854 kelch-like 26 [Homo sapiens]
Length = 615
Score = 30.4 bits (67), Expect = 3.1
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 241 VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGV 274
VL I + FPA V + +C++YFR +FTGG+
Sbjct: 66 VLTINREAFPAHKVV---LAACSDYFRAMFTGGM 96
>gi|239750932 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 6.9
Identities = 11/61 (18%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 344 MHLHDTAFIGPALLFLDQYFNSFIDEYIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHV 403
+H+H + L+ Y + +I Y+ +I + + R C+ +C + +H+++++
Sbjct: 89 IHIHMCIY-----LYTHMYTHVYIHVYVYTYICIYTYMYT--RICIHICTYLYTHMYVYI 141
Query: 404 F 404
+
Sbjct: 142 Y 142
>gi|149158709 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 29.3 bits (64), Expect = 6.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 370 YIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRI 406
+I+ WI F FF +I +C + CN+ H+H+F I
Sbjct: 424 FILCWIPY-FIFFMVIAFCKNCCNE-----HLHMFTI 454
>gi|149158706 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 29.3 bits (64), Expect = 6.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 370 YIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRI 406
+I+ WI F FF +I +C + CN+ H+H+F I
Sbjct: 424 FILCWIPY-FIFFMVIAFCKNCCNE-----HLHMFTI 454
>gi|149158704 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 29.3 bits (64), Expect = 6.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 370 YIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRI 406
+I+ WI F FF +I +C + CN+ H+H+F I
Sbjct: 424 FILCWIPY-FIFFMVIAFCKNCCNE-----HLHMFTI 454
>gi|4504491 histamine receptor H1 [Homo sapiens]
Length = 487
Score = 29.3 bits (64), Expect = 6.9
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 370 YIVLWIALVFSFFDLIRYCVSVCNQIASHLHIHVFRI 406
+I+ WI F FF +I +C + CN+ H+H+F I
Sbjct: 424 FILCWIPY-FIFFMVIAFCKNCCNE-----HLHMFTI 454
>gi|155369269 tetraspanin 19 [Homo sapiens]
Length = 248
Score = 28.9 bits (63), Expect = 9.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 65 EPLMQGYWEWLVRRVPSWIAPNLITIIGLSINICTT 100
EPL Y E ++ +W N++T+IG++ + T+
Sbjct: 190 EPLNATYLEGCENKISAWYNVNVLTLIGINFGLLTS 225
>gi|46048143 olfactory receptor, family 1, subfamily N, member 1
[Homo sapiens]
Length = 311
Score = 28.9 bits (63), Expect = 9.0
Identities = 29/100 (29%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
Query: 181 WMFFCCFAGTFMFYCAHWQTYVSGTLRFGIIDVTEVQIFIIIMHLLAVIGGPPFWQSMIP 240
W+ A T F A V+G + D+T V L + M+
Sbjct: 147 WVLTNIVALTHTFLMARLSFCVTGEIAHFFCDITPV--------LKLSCSDTHINEMMVF 198
Query: 241 VLNIQMKIFPALCTVAGTIFSCTNYFRVIFTGGVGKNGST 280
VL + I P LC V I RV GGVGK ST
Sbjct: 199 VLGGTVLIVPFLCIVTSYIHIVPAILRVRTRGGVGKAFST 238
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.329 0.141 0.460
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,983,430
Number of Sequences: 37866
Number of extensions: 681290
Number of successful extensions: 1731
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1716
Number of HSP's gapped (non-prelim): 23
length of query: 416
length of database: 18,247,518
effective HSP length: 105
effective length of query: 311
effective length of database: 14,271,588
effective search space: 4438463868
effective search space used: 4438463868
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.